Literature DB >> 12058610

Global analysis of large-scale chemical and biological experiments.

David E Root1, Brian P Kelley, Brent R Stockwell.   

Abstract

Research in the life sciences is increasingly dominated by high-throughput data collection methods that benefit from a global approach to data analysis. Recent innovations that facilitate such comprehensive analyses are highlighted. Several developments enable the study of the relationships between newly derived experimental information, such as biological activity in chemical screens or gene expression studies, and prior information, such as physical descriptors for small molecules or functional annotation for genes. The way in which global analyses can be applied to both chemical screens and transcription profiling experiments using a set of common machine learning tools is discussed.

Mesh:

Year:  2002        PMID: 12058610      PMCID: PMC1351388     

Source DB:  PubMed          Journal:  Curr Opin Drug Discov Devel        ISSN: 1367-6733


  28 in total

1.  Improving the odds in discriminating "drug-like" from "non drug-like" compounds.

Authors:  T M Frimurer; R Bywater; L Naerum; L N Lauritsen; S Brunak
Journal:  J Chem Inf Comput Sci       Date:  2000 Nov-Dec

2.  A new and simple approach to chemical complexity. Application to the synthesis of natural products.

Authors:  R Barone; M Chanon
Journal:  J Chem Inf Comput Sci       Date:  2001 Mar-Apr

Review 3.  Target-oriented and diversity-oriented organic synthesis in drug discovery.

Authors:  S L Schreiber
Journal:  Science       Date:  2000-03-17       Impact factor: 47.728

4.  Novel chirality descriptors derived from molecular topology.

Authors:  A Golbraikh; D Bonchev; A Tropsha
Journal:  J Chem Inf Comput Sci       Date:  2001 Jan-Feb

5.  Drug-like index: a new approach to measure drug-like compounds and their diversity.

Authors:  J Xu; J Stevenson
Journal:  J Chem Inf Comput Sci       Date:  2000 Sep-Oct

6.  Discriminating between drugs and nondrugs by prediction of activity spectra for substances (PASS).

Authors:  S Anzali; G Barnickel; B Cezanne; M Krug; D Filimonov; V Poroikov
Journal:  J Med Chem       Date:  2001-07-19       Impact factor: 7.446

7.  Chemosensitivity prediction by transcriptional profiling.

Authors:  J E Staunton; D K Slonim; H A Coller; P Tamayo; M J Angelo; J Park; U Scherf; J K Lee; W O Reinhold; J N Weinstein; J P Mesirov; E S Lander; T R Golub
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-11       Impact factor: 11.205

8.  Chemical descriptors with distinct levels of information content and varying sensitivity to differences between selected compound databases identified by SE-DSE analysis.

Authors:  Jeffrey W Godden; Jürgen Bajorath
Journal:  J Chem Inf Comput Sci       Date:  2002 Jan-Feb

Review 9.  DNA microarrays and beyond: completing the journey from tissue to cell.

Authors:  J C Mills; K A Roth; R L Cagan; J I Gordon
Journal:  Nat Cell Biol       Date:  2001-08       Impact factor: 28.824

10.  Can we learn to distinguish between "drug-like" and "nondrug-like" molecules?

Authors:  A Ajay; W P Walters; M A Murcko
Journal:  J Med Chem       Date:  1998-08-27       Impact factor: 7.446

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  3 in total

Review 1.  Exploring biology with small organic molecules.

Authors:  Brent R Stockwell
Journal:  Nature       Date:  2004-12-16       Impact factor: 49.962

2.  Microarrays of small molecules embedded in biodegradable polymers for use in mammalian cell-based screens.

Authors:  Steve N Bailey; David M Sabatini; Brent R Stockwell
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-08       Impact factor: 11.205

Review 3.  Big data: the next frontier for innovation in therapeutics and healthcare.

Authors:  Naiem T Issa; Stephen W Byers; Sivanesan Dakshanamurthy
Journal:  Expert Rev Clin Pharmacol       Date:  2014-04-07       Impact factor: 5.045

  3 in total

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