Literature DB >> 12032228

Limitations of the use of single base changes in the p53 gene to detect minimal residual disease of breast cancer.

R K B Dang1, R S Anthony, J I O Craig, R C F Leonard, A C Parker.   

Abstract

BACKGROUND/AIMS: Peripheral blood progenitor cell (PBPC) transplantation is frequently used in the treatment of malignant diseases, but contamination of the graft by tumour cells is a real concern and may lead to disease relapse. The feasibility of applying heterogeneous single base genetic changes as tumour specific markers to detect minimal residual disease in PBPC harvests was studied, using the p53 gene and breast cancer as models.
METHODS: Tumour tissues from 51 patients with cellular aliquots from PBPC harvests available were studied. Thirty eight patients had metastatic disease or were at high risk of metastasis, and 13 had high risk stage II/III disease with four or more involved axillary lymph nodes. Tumour DNA was screened for p53 mutations in exons 5 to 9, using denaturing gradient gel electrophoresis, followed by sequencing. Based on sequence information, allele specific primers were designed for each mutation and the non-radioisotopic, amplification refractory mutation system (ARMS) was used to screen DNA from PBPC harvests for minimal residual disease. Attempts were made to optimise each system, based on parameters determined using the T47D breast cancer cell line with a confirmed point mutation in codon 194.
RESULTS: Twelve different somatic mutations were found, two of which could not be sequenced. The remainder were point mutations. Only five of the 10 ARMS systems were successfully optimised, and minimal residual disease detection sensitivities ranged from one copy of tumour DNA in 10(2) to 10(3) copies of wild-type DNA. Using ARMS, three of five patients and eight of 12 of their PBPC harvests showed minimal residual disease.
CONCLUSIONS: These results suggest that the use of single base genetic changes in minimal residual disease detection is relatively insensitive and is limited to a small number of patients and to certain mutations. In addition, it is labourious and therefore unlikely to play an important role in clinical practice.

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Year:  2002        PMID: 12032228      PMCID: PMC1187170          DOI: 10.1136/mp.55.3.177

Source DB:  PubMed          Journal:  Mol Pathol        ISSN: 1366-8714


  33 in total

1.  Mismatch amplification mutation assay (MAMA): application to the c-H-ras gene.

Authors:  R S Cha; H Zarbl; P Keohavong; W G Thilly
Journal:  PCR Methods Appl       Date:  1992-08

2.  PCR amplification of specific alleles (PASA) is a general method for rapidly detecting known single-base changes.

Authors:  S S Sommer; A R Groszbach; C D Bottema
Journal:  Biotechniques       Date:  1992-01       Impact factor: 1.993

3.  Polymorphism at codon 213 within the p53 gene.

Authors:  D Carbone; I Chiba; T Mitsudomi
Journal:  Oncogene       Date:  1991-09       Impact factor: 9.867

Review 4.  PCR amplification of specific alleles: rapid detection of known mutations and polymorphisms.

Authors:  C D Bottema; S S Sommer
Journal:  Mutat Res       Date:  1993-07       Impact factor: 2.433

5.  Mutations in the p53 gene in primary human breast cancers.

Authors:  R J Osborne; G R Merlo; T Mitsudomi; T Venesio; D S Liscia; A P Cappa; I Chiba; T Takahashi; M M Nau; R Callahan
Journal:  Cancer Res       Date:  1991-11-15       Impact factor: 12.701

6.  Constant denaturant gel electrophoresis as a rapid screening technique for p53 mutations.

Authors:  A L Børresen; E Hovig; B Smith-Sørensen; D Malkin; S Lystad; T I Andersen; J M Nesland; K J Isselbacher; S H Friend
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-01       Impact factor: 11.205

7.  Clonal selection in acute lymphoblastic leukaemia demonstrated by polymerase chain reaction analysis of immunoglobulin heavy chain and T-cell receptor delta chain rearrangements.

Authors:  K Langlands; J I Craig; R S Anthony; A C Parker
Journal:  Leukemia       Date:  1993-07       Impact factor: 11.528

8.  Extension of base mispairs by Taq DNA polymerase: implications for single nucleotide discrimination in PCR.

Authors:  M M Huang; N Arnheim; M F Goodman
Journal:  Nucleic Acids Res       Date:  1992-09-11       Impact factor: 16.971

9.  Detection of K-ras mutation in sputum by mutant-allele-specific amplification (MASA).

Authors:  S Takeda; S Ichii; Y Nakamura
Journal:  Hum Mutat       Date:  1993       Impact factor: 4.878

10.  Clonal expansion of p53 mutant cells is associated with brain tumour progression.

Authors:  D Sidransky; T Mikkelsen; K Schwechheimer; M L Rosenblum; W Cavanee; B Vogelstein
Journal:  Nature       Date:  1992-02-27       Impact factor: 49.962

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  2 in total

1.  Mutation abundance affects the therapeutic efficacy of EGFR-TKI in patients with advanced lung adenocarcinoma: A retrospective analysis.

Authors:  Huijuan Wang; Mina Zhang; Wanyu Tang; Jie Ma; Bing Wei; Yuanyuan Niu; Guowei Zhang; Peng Li; Xiangtao Yan; Zhiyong Ma
Journal:  Cancer Biol Ther       Date:  2018-04-13       Impact factor: 4.742

2.  Association of TP53 gene polymorphisms with the risk of acute lymphoblastic leukemia in Moroccan children.

Authors:  Hanaa Skhoun; Mohammed Khattab; Aziza Belkhayat; Zahra Takki Chebihi; Youssef Bakri; Nadia Dakka; Jamila El Baghdadi
Journal:  Mol Biol Rep       Date:  2022-06-15       Impact factor: 2.742

  2 in total

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