Literature DB >> 12021444

Computational stabilization of human growth hormone.

Anton V Filikov1, Robert J Hayes, Peizhi Luo, Diane M Stark, Cheryl Chan, Anirban Kundu, Bassil I Dahiyat.   

Abstract

Recombinant human growth hormone (hGH) is used worldwide for the treatment of pediatric hypopituitary dwarfism and in children suffering from low levels of hGH. It has limited stability in solution, and because of poor oral absorption, is administered by injection, typically several times a week. Development has therefore focused on more stable or sustained-release formulations and alternatives to injectable delivery that would increase bioavailability and make it easier for patients to use. We redesigned hGH computationally to improve its thermostability. A more stable variant of hGH could have improved pharmacokinetics or enhanced shelf-life, or be more amenable to use in alternate delivery systems and formulations. The computational design was performed using a previously developed combinatorial optimization algorithm based on the dead-end elimination theorem. The algorithm uses an empirical free energy function for scoring designed sequences. This function was augmented with a term that accounts for the loss of backbone and side-chain conformational entropy. The weighting factors for this term, the electrostatic interaction term, and the polar hydrogen burial term were optimized by minimizing the number of mutations designed by the algorithm relative to wild-type. Forty-five residues in the core of the protein were selected for optimization with the modified potential function. The proteins designed using the developed scoring function contained six to 10 mutations, showed enhancement in the melting temperature of up to 16 degrees C, and were biologically active in cell proliferation studies. These results show the utility of our free energy function in automated protein design.

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Year:  2002        PMID: 12021444      PMCID: PMC2373623          DOI: 10.1110/ps.3500102

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  35 in total

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Journal:  Proteins       Date:  2000-08-15

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Authors:  T P Creamer
Journal:  Methods Mol Biol       Date:  2001

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Authors:  B Kuhlman; D Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2000-09-12       Impact factor: 11.205

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Authors:  T P Creamer; G D Rose
Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-01       Impact factor: 11.205

5.  The dead-end elimination theorem and its use in protein side-chain positioning.

Authors:  J Desmet; M De Maeyer; B Hazes; I Lasters
Journal:  Nature       Date:  1992-04-09       Impact factor: 49.962

6.  Backbone-dependent rotamer library for proteins. Application to side-chain prediction.

Authors:  R L Dunbrack; M Karplus
Journal:  J Mol Biol       Date:  1993-03-20       Impact factor: 5.469

7.  Empirical scale of side-chain conformational entropy in protein folding.

Authors:  S D Pickett; M J Sternberg
Journal:  J Mol Biol       Date:  1993-06-05       Impact factor: 5.469

8.  Effect of growth hormone on short normal children.

Authors:  P C Hindmarsh; C G Brook
Journal:  Br Med J (Clin Res Ed)       Date:  1987-09-05

9.  Human growth hormone and extracellular domain of its receptor: crystal structure of the complex.

Authors:  A M de Vos; M Ultsch; A A Kossiakoff
Journal:  Science       Date:  1992-01-17       Impact factor: 47.728

10.  Comparison of the pharmacological properties of pituitary and biosynthetic human growth hormone. Demonstration of antinatriuretic/antidiuretic and barbital sleep effects of human growth hormone in rats.

Authors:  K D Jørgensen
Journal:  Acta Endocrinol (Copenh)       Date:  1987-01
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  10 in total

1.  Combining computational and experimental screening for rapid optimization of protein properties.

Authors:  Robert J Hayes; Jorg Bentzien; Marie L Ary; Marian Y Hwang; Jonathan M Jacinto; Jöst Vielmetter; Anirban Kundu; Bassil I Dahiyat
Journal:  Proc Natl Acad Sci U S A       Date:  2002-11-21       Impact factor: 11.205

2.  Kinetic and structural characterization of thermostabilized mutants of human carbonic anhydrase II.

Authors:  Zoë Fisher; Christopher D Boone; Shya Masri Biswas; Balasubramanian Venkatakrishnan; Mayank Aggarwal; Chingkuang Tu; Mavis Agbandje-McKenna; David Silverman; Robert McKenna
Journal:  Protein Eng Des Sel       Date:  2012-06-12       Impact factor: 1.650

3.  Allosteric Dynamic Control of Binding.

Authors:  Fidan Sumbul; Saliha Ece Acuner-Ozbabacan; Turkan Haliloglu
Journal:  Biophys J       Date:  2015-08-31       Impact factor: 4.033

4.  Stabilizing peptide fusion for solving the stability and solubility problems of therapeutic proteins.

Authors:  Eui Nam Lee; Young Mok Kim; Hye Ja Lee; Sang Woo Park; Han Young Jung; Jae Myun Lee; Yong-Ho Ahn; Jongsun Kim
Journal:  Pharm Res       Date:  2005-09-22       Impact factor: 4.200

5.  Structural and catalytic effects of proline substitution and surface loop deletion in the extended active site of human carbonic anhydrase II.

Authors:  Christopher D Boone; Valerio Rasi; Chingkuang Tu; Robert McKenna
Journal:  FEBS J       Date:  2015-03-23       Impact factor: 5.542

6.  Expression of functional recombinant human growth hormone in transgenic soybean seeds.

Authors:  Nicolau B Cunha; André M Murad; Thaís M Cipriano; Ana Cláudia G Araújo; Francisco J L Aragão; Adilson Leite; Giovanni R Vianna; Timothy R McPhee; Gustavo H M F Souza; Michael J Waters; Elíbio L Rech
Journal:  Transgenic Res       Date:  2010-11-11       Impact factor: 2.788

7.  Toward rational thermostabilization of Aspergillus oryzae cutinase: Insights into catalytic and structural stability.

Authors:  Abhijit N Shirke; Danielle Basore; Glenn L Butterfoss; Richard Bonneau; Christopher Bystroff; Richard A Gross
Journal:  Proteins       Date:  2015-11-26

8.  High-resolution structural and thermodynamic analysis of extreme stabilization of human procarboxypeptidase by computational protein design.

Authors:  Gautam Dantas; Colin Corrent; Steve L Reichow; James J Havranek; Ziad M Eletr; Nancy G Isern; Brian Kuhlman; Gabriele Varani; Ethan A Merritt; David Baker
Journal:  J Mol Biol       Date:  2006-12-02       Impact factor: 5.469

Review 9.  Computational approaches for rational design of proteins with novel functionalities.

Authors:  Manish Kumar Tiwari; Ranjitha Singh; Raushan Kumar Singh; In-Won Kim; Jung-Kul Lee
Journal:  Comput Struct Biotechnol J       Date:  2012-09-28       Impact factor: 7.271

10.  Optimization of expression, purification and secretion of functional recombinant human growth hormone in Escherichia coli using modified staphylococcal protein a signal peptide.

Authors:  Garshasb Rigi; Amin Rostami; Habib Ghomi; Gholamreza Ahmadian; Vasiqe Sadat Mirbagheri; Meisam Jeiranikhameneh; Majid Vahed; Sahel Rahimi
Journal:  BMC Biotechnol       Date:  2021-08-16       Impact factor: 2.563

  10 in total

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