Literature DB >> 26522152

Toward rational thermostabilization of Aspergillus oryzae cutinase: Insights into catalytic and structural stability.

Abhijit N Shirke1,2, Danielle Basore2,3, Glenn L Butterfoss4, Richard Bonneau5, Christopher Bystroff2,3,6, Richard A Gross1,2.   

Abstract

Cutinases are powerful hydrolases that can cleave ester bonds of polyesters such as poly(ethylene terephthalate) (PET), opening up new options for enzymatic routes for polymer recycling and surface modification reactions. Cutinase from Aspergillus oryzae (AoC) is promising owing to the presence of an extended groove near the catalytic triad which is important for the orientation of polymeric chains. However, the catalytic efficiency of AoC on rigid polymers like PET is limited by its low thermostability; as it is essential to work at or over the glass transition temperature (Tg) of PET, that is, 70 °C. Consequently, in this study we worked toward the thermostabilization of AoC. Use of Rosetta computational protein design software in conjunction with rational design led to a 6 °C improvement in the thermal unfolding temperature (Tm) and a 10-fold increase in the half-life of the enzyme activity at 60 °C. Surprisingly, thermostabilization did not improve the rate or temperature optimum of enzyme activity. Three notable findings are presented as steps toward designing more thermophilic cutinase: (a) surface salt bridge optimization produced enthalpic stabilization, (b) mutations to proline reduced the entropy loss upon folding, and (c) the lack of a correlative increase in the temperature optimum of catalytic activity with thermodynamic stability suggests that the active site is locally denatured at a temperature below the Tm of the global structure.
© 2015 Wiley Periodicals, Inc.

Entities:  

Keywords:  PET; Rosetta; esterase; green chemistry; poly(ethylene terephthalate); protein design; protein engineering; thermophile

Mesh:

Substances:

Year:  2015        PMID: 26522152      PMCID: PMC4715774          DOI: 10.1002/prot.24955

Source DB:  PubMed          Journal:  Proteins        ISSN: 0887-3585


  43 in total

1.  Automated selection of stabilizing mutations in designed and natural proteins.

Authors:  Benjamin Borgo; James J Havranek
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-17       Impact factor: 11.205

2.  New model substrates for enzymes hydrolysing polyethyleneterephthalate and polyamide fibres.

Authors:  Sonja Heumann; Anita Eberl; Herbert Pobeheim; Stefan Liebminger; Gudrun Fischer-Colbrie; Eva Almansa; Artur Cavaco-Paulo; Georg M Gübitz
Journal:  J Biochem Biophys Methods       Date:  2006-03-09

3.  Prediction of local structure in proteins using a library of sequence-structure motifs.

Authors:  C Bystroff; D Baker
Journal:  J Mol Biol       Date:  1998-08-21       Impact factor: 5.469

4.  Screening of microbes for novel acidic cutinases and cloning and expression of an acidic cutinase from Aspergillus niger CBS 513.88.

Authors:  Antti Nyyssölä; Ville Pihlajaniemi; Riikka Järvinen; Saara Mikander; Hanna Kontkanen; Kristiina Kruus; Heikki Kallio; Johanna Buchert
Journal:  Enzyme Microb Technol       Date:  2013-01-17       Impact factor: 3.493

5.  Diversity of polyester-degrading bacteria in compost and molecular analysis of a thermoactive esterase from Thermobifida alba AHK119.

Authors:  Xiaoping Hu; Uschara Thumarat; Xian Zhang; Ming Tang; Fusako Kawai
Journal:  Appl Microbiol Biotechnol       Date:  2010-06       Impact factor: 4.813

6.  A low molecular mass cutinase of Thielavia terrestris efficiently hydrolyzes poly(esters).

Authors:  Shaoqing Yang; Haibo Xu; Qiaojuan Yan; Yu Liu; Peng Zhou; Zhengqiang Jiang
Journal:  J Ind Microbiol Biotechnol       Date:  2012-12-28       Impact factor: 3.346

7.  Identification and comparison of cutinases for synthetic polyester degradation.

Authors:  Peter James Baker; Christopher Poultney; Zhiqiang Liu; Richard Gross; Jin Kim Montclare
Journal:  Appl Microbiol Biotechnol       Date:  2011-06-29       Impact factor: 4.813

8.  Biodegradable plastic-degrading enzyme from Pseudozyma antarctica: cloning, sequencing, and characterization.

Authors:  Yukiko Shinozaki; Tomotake Morita; Xiao-hong Cao; Shigenobu Yoshida; Motoo Koitabashi; Takashi Watanabe; Ken Suzuki; Yuka Sameshima-Yamashita; Toshiaki Nakajima-Kambe; Takeshi Fujii; Hiroko K Kitamoto
Journal:  Appl Microbiol Biotechnol       Date:  2012-06-08       Impact factor: 4.813

Review 9.  Practically useful: what the Rosetta protein modeling suite can do for you.

Authors:  Kristian W Kaufmann; Gordon H Lemmon; Samuel L Deluca; Jonathan H Sheehan; Jens Meiler
Journal:  Biochemistry       Date:  2010-04-13       Impact factor: 3.162

10.  ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules.

Authors:  Andrew Leaver-Fay; Michael Tyka; Steven M Lewis; Oliver F Lange; James Thompson; Ron Jacak; Kristian Kaufman; P Douglas Renfrew; Colin A Smith; Will Sheffler; Ian W Davis; Seth Cooper; Adrien Treuille; Daniel J Mandell; Florian Richter; Yih-En Andrew Ban; Sarel J Fleishman; Jacob E Corn; David E Kim; Sergey Lyskov; Monica Berrondo; Stuart Mentzer; Zoran Popović; James J Havranek; John Karanicolas; Rhiju Das; Jens Meiler; Tanja Kortemme; Jeffrey J Gray; Brian Kuhlman; David Baker; Philip Bradley
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

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  10 in total

1.  Active Site Flexibility as a Hallmark for Efficient PET Degradation by I. sakaiensis PETase.

Authors:  Tobias Fecker; Pablo Galaz-Davison; Felipe Engelberger; Yoshie Narui; Marcos Sotomayor; Loreto P Parra; César A Ramírez-Sarmiento
Journal:  Biophys J       Date:  2018-03-27       Impact factor: 4.033

Review 2.  Perspectives on the Role of Enzymatic Biocatalysis for the Degradation of Plastic PET.

Authors:  Rita P Magalhães; Jorge M Cunha; Sérgio F Sousa
Journal:  Int J Mol Sci       Date:  2021-10-19       Impact factor: 5.923

3.  Structure-function analysis of two closely related cutinases from Thermobifida cellulosilytica.

Authors:  Jenny Arnling Bååth; Vera Novy; Leonor V Carneiro; Georg M Guebitz; Lisbeth Olsson; Peter Westh; Doris Ribitsch
Journal:  Biotechnol Bioeng       Date:  2021-11-17       Impact factor: 4.395

4.  Identification of a hot-spot to enhance Candida rugosa lipase thermostability by rational design methods.

Authors:  Guanlin Li; Yuan Chen; Xingrong Fang; Feng Su; Li Xu; Yunjun Yan
Journal:  RSC Adv       Date:  2018-01-09       Impact factor: 4.036

5.  High-level expression and characterization of a novel cutinase from Malbranchea cinnamomea suitable for butyl butyrate production.

Authors:  Xiaojie Duan; Yu Liu; Xin You; Zhengqiang Jiang; Shaoxiang Yang; Shaoqing Yang
Journal:  Biotechnol Biofuels       Date:  2017-09-19       Impact factor: 6.040

Review 6.  Review: Engineering of thermostable enzymes for industrial applications.

Authors:  Federica Rigoldi; Stefano Donini; Alberto Redaelli; Emilio Parisini; Alfonso Gautieri
Journal:  APL Bioeng       Date:  2018-01-11

Review 7.  Enzymatic Remediation of Polyethylene Terephthalate (PET)-Based Polymers for Effective Management of Plastic Wastes: An Overview.

Authors:  Ankita Maurya; Amrik Bhattacharya; Sunil Kumar Khare
Journal:  Front Bioeng Biotechnol       Date:  2020-11-19

Review 8.  A Review of Advanced Molecular Engineering Approaches to Enhance the Thermostability of Enzyme Breakers: From Prospective of Upstream Oil and Gas Industry.

Authors:  Muhammad Naeem; Amjad Bajes Khalil; Zeeshan Tariq; Mohamed Mahmoud
Journal:  Int J Mol Sci       Date:  2022-01-30       Impact factor: 5.923

9.  Residue-Specific Incorporation of the Non-Canonical Amino Acid Norleucine Improves Lipase Activity on Synthetic Polyesters.

Authors:  Karolina Haernvall; Patrik Fladischer; Heidemarie Schoeffmann; Sabine Zitzenbacher; Tea Pavkov-Keller; Karl Gruber; Michael Schick; Motonori Yamamoto; Andreas Kuenkel; Doris Ribitsch; Georg M Guebitz; Birgit Wiltschi
Journal:  Front Bioeng Biotechnol       Date:  2022-01-26

Review 10.  Microbial lipases and their industrial applications: a comprehensive review.

Authors:  Prem Chandra; Ranjan Singh; Pankaj Kumar Arora
Journal:  Microb Cell Fact       Date:  2020-08-26       Impact factor: 5.328

  10 in total

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