Literature DB >> 12008673

Development and characterization of a reconstituted yeast translation initiation system.

Mikkel A Algire1, David Maag, Peter Savio, Michael G Acker, Salvador Z Tarun, Alan B Sachs, Katsura Asano, Klaus H Nielsen, Deanne S Olsen, Lon Phan, Alan G Hinnebusch, Jon R Lorsch.   

Abstract

To provide a bridge between in vivo and in vitro studies of eukaryotic translation initiation, we have developed a reconstituted translation initiation system using components from the yeast Saccharomyces cerevisiae. We have purified a minimal set of initiation factors (elFs) that, together with yeast 80S ribosomes, GTP, and initiator methionyl-tRNA, are sufficient to assemble active initiation complexes on a minimal mRNA template. The kinetics of various steps in the pathway of initiation complex assembly and the formation of the first peptide bond in vitro have been explored. The formation of active initiation complexes in this system is dependent on ribosomes, mRNA, Met-tRNAi, GTP hydrolysis, elF1, elF1A, elF2, elF5, and elF5B. Our data indicate that elF1 and elF1A both facilitate the binding of the elF2 x GTP x Met-tRNAi complex to the 40S ribosomal subunit to form the 43S complex. elF5 stimulates a step after 43S complex formation, consistent with its proposed role in activating GTP hydrolysis by elF2 upon initiation codon recognition. The presence of elF5B is required for the joining of the 40S and 60S subunits to form the 80S initiation complex. The step at which each of these factors acts in this reconstituted system is in agreement with previous data from in vivo studies and work using reconstituted mammalian systems, indicating that the system recapitulates fundamental events in translation initiation in eukaryotic cells. This system should allow us to couple powerful yeast genetic and molecular biological experiments with in vitro kinetic and biophysical experiments, yielding a better understanding of the molecular mechanics of this central, complex process.

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Year:  2002        PMID: 12008673      PMCID: PMC1370259          DOI: 10.1017/s1355838202029527

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  24 in total

1.  Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast.

Authors:  A van Hoof; P Lennertz; R Parker
Journal:  EMBO J       Date:  2000-03-15       Impact factor: 11.598

Review 2.  Quantitation of parameters that determine the rate of ovalbumin synthesis.

Authors:  R D Palmiter
Journal:  Cell       Date:  1975-03       Impact factor: 41.582

3.  The joining of ribosomal subunits in eukaryotes requires eIF5B.

Authors:  T V Pestova; I B Lomakin; J H Lee; S K Choi; T E Dever; C U Hellen
Journal:  Nature       Date:  2000-01-20       Impact factor: 49.962

4.  A fractionated reticulocyte lysate retains high efficiency for protein synthesis.

Authors:  S J Morley; J W Hershey
Journal:  Biochimie       Date:  1990-04       Impact factor: 4.079

5.  The mechanism of action of protein synthesis initiation factors from rabbit reticulocytes.

Authors:  R Benne; J W Hershey
Journal:  J Biol Chem       Date:  1978-05-10       Impact factor: 5.157

6.  Mode of action of protein synthesis initiation factor eIF-1 from rabbit reticulocytes.

Authors:  A Thomas; W Spaan; H van Steeg; H O Voorma; R Benne
Journal:  FEBS Lett       Date:  1980-07-11       Impact factor: 4.124

7.  Initiation of mammalian protein synthesis. II. The assembly of the initiation complex with purified initiation factors.

Authors:  H Trachsel; B Erni; M H Schreier; T Staehelin
Journal:  J Mol Biol       Date:  1977-11       Impact factor: 5.469

8.  Purification and kinetic analysis of eIF2B from Saccharomyces cerevisiae.

Authors:  J Nika; W Yang; G D Pavitt; A G Hinnebusch; E M Hannig
Journal:  J Biol Chem       Date:  2000-08-25       Impact factor: 5.157

9.  Glycerol, sucrose, and other diol-containing reagents are not inert components in in vitro incubations containing aminoacyl-tRNA.

Authors:  A E Johnson; H J Adkins
Journal:  Anal Biochem       Date:  1984-03       Impact factor: 3.365

10.  The mechanism of action of eukaryotic initiation factor 4C in protein synthesis.

Authors:  A Thomas; H Goumans; H O Voorma; R Benne
Journal:  Eur J Biochem       Date:  1980
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  74 in total

1.  Ribosome recycling step in yeast cytoplasmic protein synthesis is catalyzed by eEF3 and ATP.

Authors:  Shinya Kurata; Klaus H Nielsen; Sarah F Mitchell; Jon R Lorsch; Akira Kaji; Hideko Kaji
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-01       Impact factor: 11.205

2.  Domains of eIF1A that mediate binding to eIF2, eIF3 and eIF5B and promote ternary complex recruitment in vivo.

Authors:  DeAnne S Olsen; Erin M Savner; Amy Mathew; Fan Zhang; Thanuja Krishnamoorthy; Lon Phan; Alan G Hinnebusch
Journal:  EMBO J       Date:  2003-01-15       Impact factor: 11.598

3.  Chromatographic purification of highly active yeast ribosomes.

Authors:  Arturas Meskauskas; Jonathan A Leshin; Jonathan D Dinman
Journal:  J Vis Exp       Date:  2011-10-24       Impact factor: 1.355

Review 4.  A mechanistic overview of translation initiation in eukaryotes.

Authors:  Colin Echeverría Aitken; Jon R Lorsch
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

5.  The 5'-7-methylguanosine cap on eukaryotic mRNAs serves both to stimulate canonical translation initiation and to block an alternative pathway.

Authors:  Sarah F Mitchell; Sarah E Walker; Mikkel A Algire; Eun-Hee Park; Alan G Hinnebusch; Jon R Lorsch
Journal:  Mol Cell       Date:  2010-09-24       Impact factor: 17.970

6.  Dissociation of eIF1 from the 40S ribosomal subunit is a key step in start codon selection in vivo.

Authors:  Yuen-Nei Cheung; David Maag; Sarah F Mitchell; Christie A Fekete; Mikkel A Algire; Julie E Takacs; Nikolay Shirokikh; Tatyana Pestova; Jon R Lorsch; Alan G Hinnebusch
Journal:  Genes Dev       Date:  2007-05-15       Impact factor: 11.361

7.  Interactions of eukaryotic translation initiation factor 3 (eIF3) subunit NIP1/c with eIF1 and eIF5 promote preinitiation complex assembly and regulate start codon selection.

Authors:  Leos Valásek; Klaus H Nielsen; Fan Zhang; Christie A Fekete; Alan G Hinnebusch
Journal:  Mol Cell Biol       Date:  2004-11       Impact factor: 4.272

8.  Interaction of the RNP1 motif in PRT1 with HCR1 promotes 40S binding of eukaryotic initiation factor 3 in yeast.

Authors:  Klaus H Nielsen; Leos Valásek; Caroah Sykes; Antonina Jivotovskaya; Alan G Hinnebusch
Journal:  Mol Cell Biol       Date:  2006-04       Impact factor: 4.272

9.  A two-step binding model proposed for the electrostatic interactions of ricin a chain with ribosomes.

Authors:  Xiao-Ping Li; Jia-Chi Chiou; Miguel Remacha; Juan P G Ballesta; Nilgun E Tumer
Journal:  Biochemistry       Date:  2009-05-12       Impact factor: 3.162

10.  Distinct interactions of eIF4A and eIF4E with RNA helicase Ded1 stimulate translation in vivo.

Authors:  Suna Gulay; Neha Gupta; Jon R Lorsch; Alan G Hinnebusch
Journal:  Elife       Date:  2020-05-29       Impact factor: 8.140

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