Literature DB >> 12004892

Development and mapping of SSR markers for maize.

Natalya Sharopova1, Michael D McMullen, Linda Schultz, Steve Schroeder, Hector Sanchez-Villeda, Jack Gardiner, Dean Bergstrom, Katherine Houchins, Susan Melia-Hancock, Theresa Musket, Ngozi Duru, Mary Polacco, Keith Edwards, Thomas Ruff, James C Register, Cory Brouwer, Richard Thompson, Riccardo Velasco, Emily Chin, Michael Lee, Wendy Woodman-Clikeman, Mary Jane Long, Emmanuel Liscum, Karen Cone, Georgia Davis, Edward H Coe.   

Abstract

Microsatellite or simple sequence repeat (SSR) markers have wide applicability for genetic analysis in crop plant improvement strategies. The objectives of this project were to isolate, characterize, and map a comprehensive set of SSR markers for maize (Zea mays L.). We developed 1051 novel SSR markers for maize from microsatellite-enriched libraries and by identification of microsatellite-containing sequences in public and private databases. Three mapping populations were used to derive map positions for 978 of these markers. The main mapping population was the intermated B73 x Mo17 (IBM) population. In mapping this intermated recombinant inbred line population, we have contributed to development of a new high-resolution map resource for maize. The primer sequences, original sequence sources, data on polymorphisms across 11 inbred lines, and map positions have been integrated with information on other public SSR markers and released through MaizeDB at URL:www.agron.missouri.edu. The maize research community now has the most detailed and comprehensive SSR marker set of any plant species.

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Year:  2002        PMID: 12004892     DOI: 10.1023/a:1014868625533

Source DB:  PubMed          Journal:  Plant Mol Biol        ISSN: 0167-4412            Impact factor:   4.076


  27 in total

1.  Theoretical Distribution of the Initial Linkage Block Lengths Intact in the Gametes of a Population Intermated for N Generations.

Authors:  W D Hanson
Journal:  Genetics       Date:  1959-09       Impact factor: 4.562

2.  The Breakup of Initial Linkage Blocks under Selected Mating Systems.

Authors:  W D Hanson
Journal:  Genetics       Date:  1959-09       Impact factor: 4.562

3.  Genome-wide high-resolution mapping by recurrent intermating using Arabidopsis thaliana as a model.

Authors:  S C Liu; S P Kowalski; T H Lan; K A Feldmann; A H Paterson
Journal:  Genetics       Date:  1996-01       Impact factor: 4.562

4.  Molecular mapping of segregation distortion loci in Aegilops tauschii.

Authors:  J D Faris; B Laddomada; B S Gill
Journal:  Genetics       Date:  1998-05       Impact factor: 4.562

5.  A comprehensive genetic map of the mouse genome.

Authors:  W F Dietrich; J Miller; R Steen; M A Merchant; D Damron-Boles; Z Husain; R Dredge; M J Daly; K A Ingalls; T J O'Connor
Journal:  Nature       Date:  1996-03-14       Impact factor: 49.962

6.  A comprehensive genetic map of the human genome based on 5,264 microsatellites.

Authors:  C Dib; S Fauré; C Fizames; D Samson; N Drouot; A Vignal; P Millasseau; S Marc; J Hazan; E Seboun; M Lathrop; G Gyapay; J Morissette; J Weissenbach
Journal:  Nature       Date:  1996-03-14       Impact factor: 49.962

7.  Inferences on the genome structure of progenitor maize through comparative analysis of rice, maize and the domesticated panicoids.

Authors:  W A Wilson; S E Harrington; W L Woodman; M Lee; M E Sorrells; S R McCouch
Journal:  Genetics       Date:  1999-09       Impact factor: 4.562

8.  Identification and high-density mapping of gene-rich regions in chromosome group 1 of wheat.

Authors:  K S Gill; B S Gill; T R Endo; T Taylor
Journal:  Genetics       Date:  1996-12       Impact factor: 4.562

9.  Cryptic simplicity in DNA is a major source of genetic variation.

Authors:  D Tautz; M Trick; G A Dover
Journal:  Nature       Date:  1986 Aug 14-20       Impact factor: 49.962

10.  Isolation, characterisation and mapping of simple sequence repeat loci in potato.

Authors:  D Milbourne; R C Meyer; A J Collins; L D Ramsay; C Gebhardt; R Waugh
Journal:  Mol Gen Genet       Date:  1998-08
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  105 in total

1.  Microsatellites reveal genetic diversity in Rotylenchulus reniformis populations.

Authors:  Renée S Arias; Salliana R Stetina; Jennifer L Tonos; Jodi A Scheffler; Brian E Scheffler
Journal:  J Nematol       Date:  2009-06       Impact factor: 1.402

2.  On the determination of recombination rates in intermated recombinant inbred populations.

Authors:  Christopher R Winkler; Nicole M Jensen; Mark Cooper; Dean W Podlich; Oscar S Smith
Journal:  Genetics       Date:  2003-06       Impact factor: 4.562

3.  Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication.

Authors:  Y Vigouroux; M McMullen; C T Hittinger; K Houchins; L Schulz; S Kresovich; Y Matsuoka; J Doebley
Journal:  Proc Natl Acad Sci U S A       Date:  2002-07-08       Impact factor: 11.205

4.  Integrating genetic linkage maps with pachytene chromosome structure in maize.

Authors:  Lorinda K Anderson; Naser Salameh; Hank W Bass; Lisa C Harper; W Z Cande; Gerd Weber; Stephen M Stack
Journal:  Genetics       Date:  2004-04       Impact factor: 4.562

5.  The Rxo1/ Rba1 locus of maize controls resistance reactions to pathogenic and non-host bacteria.

Authors:  B Y Zhao; E Ardales; E Brasset; L E Claflin; J E Leach; S H Hulbert
Journal:  Theor Appl Genet       Date:  2004-04-28       Impact factor: 5.699

6.  Identification of candidate genes for in vitro androgenesis induction in maize.

Authors:  P Barret; M Brinkman; P Dufour; A Murigneux; M Beckert
Journal:  Theor Appl Genet       Date:  2004-08-27       Impact factor: 5.699

Review 7.  Molecular markers from the transcribed/expressed region of the genome in higher plants.

Authors:  P K Gupta; S Rustgi
Journal:  Funct Integr Genomics       Date:  2004-04-17       Impact factor: 3.410

8.  QTL mapping for yield and lodging resistance in an enhanced SSR-based map for tef.

Authors:  M Zeid; G Belay; S Mulkey; J Poland; M E Sorrells
Journal:  Theor Appl Genet       Date:  2010-08-13       Impact factor: 5.699

9.  Distributed simple sequence repeat markers for efficient mapping from maize public mutagenesis populations.

Authors:  Federico Martin; Sarah Dailey; A Mark Settles
Journal:  Theor Appl Genet       Date:  2010-04-18       Impact factor: 5.699

10.  An analysis of genetic diversity across the maize genome using microsatellites.

Authors:  Yves Vigouroux; Sharon Mitchell; Yoshihiro Matsuoka; Martha Hamblin; Stephen Kresovich; J Stephen C Smith; Jennifer Jaqueth; Oscar S Smith; John Doebley
Journal:  Genetics       Date:  2005-01-16       Impact factor: 4.562

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