Literature DB >> 11979279

Designing a 20-residue protein.

Jonathan W Neidigh1, R Matthew Fesinmeyer, Niels H Andersen.   

Abstract

Truncation and mutation of a poorly folded 39-residue peptide has produced 20-residue constructs that are >95% folded in water at physiological pH. These constructs optimize a novel fold, designated as the 'Trp-cage' motif, and are significantly more stable than any other miniprotein reported to date. Folding is cooperative and hydrophobically driven by the encapsulation of a Trp side chain in a sheath of Pro rings. As the smallest protein-like construct, Trp-cage miniproteins should provide a testing ground for both experimental studies and computational simulations of protein folding and unfolding pathways. Pro Trp interactions may be a particularly effective strategy for the a priori design of self-folding peptides.

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Year:  2002        PMID: 11979279     DOI: 10.1038/nsb798

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  192 in total

1.  Meeting halfway on the bridge between protein folding theory and experiment.

Authors:  Vijay S Pande
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-25       Impact factor: 11.205

2.  Understanding folding and design: replica-exchange simulations of "Trp-cage" miniproteins.

Authors:  Jed W Pitera; William Swope
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-13       Impact factor: 11.205

3.  Trp-cage: folding free energy landscape in explicit water.

Authors:  Ruhong Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-27       Impact factor: 11.205

4.  A de novo redesign of the WW domain.

Authors:  Christina M Kraemer-Pecore; Juliette T J Lecomte; John R Desjarlais
Journal:  Protein Sci       Date:  2003-10       Impact factor: 6.725

5.  Electron capture dissociation distinguishes a single D-amino acid in a protein and probes the tertiary structure.

Authors:  Christopher M Adams; Frank Kjeldsen; Roman A Zubarev; Bogdan A Budnik; Kim F Haselmann
Journal:  J Am Soc Mass Spectrom       Date:  2004-07       Impact factor: 3.109

6.  A structural model of polyglutamine determined from a host-guest method combining experiments and landscape theory.

Authors:  John M Finke; Margaret S Cheung; José N Onuchic
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

Review 7.  Spectroscopic studies of protein folding: linear and nonlinear methods.

Authors:  Arnaldo L Serrano; Matthias M Waegele; Feng Gai
Journal:  Protein Sci       Date:  2011-12-28       Impact factor: 6.725

8.  Enhanced sampling and applications in protein folding in explicit solvent.

Authors:  Cheng Zhang; Jianpeng Ma
Journal:  J Chem Phys       Date:  2010-06-28       Impact factor: 3.488

Review 9.  The structure and function of the glucagon-like peptide-1 receptor and its ligands.

Authors:  Dan Donnelly
Journal:  Br J Pharmacol       Date:  2012-05       Impact factor: 8.739

10.  Further Optimization and Validation of the Classical Drude Polarizable Protein Force Field.

Authors:  Fang-Yu Lin; Jing Huang; Poonam Pandey; Chetan Rupakheti; Jing Li; Benoı T Roux; Alexander D MacKerell
Journal:  J Chem Theory Comput       Date:  2020-04-27       Impact factor: 6.006

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