Literature DB >> 11968080

Pyrosequencing: an accurate detection platform for single nucleotide polymorphisms.

Hossein Fakhrai-Rad1, Nader Pourmand, Mostafa Ronaghi.   

Abstract

Pyrosequencing, a non-electrophoretic method for DNA sequencing, is emerging as a popular platform for analysis of single nucleotide polymorphisms (SNPs). This technology has the advantage of accuracy, ease-of-use, and high flexibility for different applications. Here, we review the methodology and the use of this technique for SNP genotyping, SNP discovery, haplotyping, and allelic frequency studies. In addition, we describe new schemes for template preparation and multiplexing as an effort for cost reduction in large-scale studies. Copyright 2002 Wiley-Liss, Inc.

Mesh:

Year:  2002        PMID: 11968080     DOI: 10.1002/humu.10078

Source DB:  PubMed          Journal:  Hum Mutat        ISSN: 1059-7794            Impact factor:   4.878


  59 in total

1.  Digital detection of genetic mutations using SPC-sequencing.

Authors:  Hameer Ruparel; Michael E Ulz; Sobin Kim; Jingyue Ju
Journal:  Genome Res       Date:  2004-02       Impact factor: 9.043

2.  Rapid screening of mtDNA coding region SNPs for the identification of west European Caucasian haplogroups.

Authors:  Anita Brandstätter; Thomas J Parsons; Walther Parson
Journal:  Int J Legal Med       Date:  2003-08-21       Impact factor: 2.686

Review 3.  Pyrosequencing: sequence typing at the speed of light.

Authors:  Matthew A Diggle; Stuart C Clarke
Journal:  Mol Biotechnol       Date:  2004-10       Impact factor: 2.695

4.  Pyrosequencing for microbial identification and characterization.

Authors:  Patrick J Cummings; Ray Ahmed; Jeffrey A Durocher; Adam Jessen; Tamar Vardi; Kristina M Obom
Journal:  J Vis Exp       Date:  2013-08-22       Impact factor: 1.355

5.  Rapid detection of rifampin resistance in Mycobacterium tuberculosis by Pyrosequencing technology.

Authors:  Pontus Jureen; Lars Engstrand; Solveig Eriksson; Anders Alderborn; Margareta Krabbe; Sven E Hoffner
Journal:  J Clin Microbiol       Date:  2006-06       Impact factor: 5.948

6.  A multi-enzyme model for Pyrosequencing.

Authors:  Ali Agah; Mariam Aghajan; Foad Mashayekhi; Sasan Amini; Ronald W Davis; James D Plummer; Mostafa Ronaghi; Peter B Griffin
Journal:  Nucleic Acids Res       Date:  2004-12-02       Impact factor: 16.971

7.  Estimating RNA editing efficiency of five editing sites in the serotonin 2C receptor by pyrosequencing.

Authors:  Kazuya Iwamoto; Miki Bundo; Tadafumi Kato
Journal:  RNA       Date:  2005-10       Impact factor: 4.942

8.  An analytical pipeline for genomic representations used for cytosine methylation studies.

Authors:  Reid F Thompson; Mark Reimers; Batbayar Khulan; Mathieu Gissot; Todd A Richmond; Quan Chen; Xin Zheng; Kami Kim; John M Greally
Journal:  Bioinformatics       Date:  2008-03-18       Impact factor: 6.937

9.  Preparation of DNA-modified nanoparticles and preliminary study for colorimetric SNP analysis using their selective aggregations.

Authors:  Toshihiro Ihara; Shojiro Tanaka; Yasushi Chikaura; Akinori Jyo
Journal:  Nucleic Acids Res       Date:  2004-07-14       Impact factor: 16.971

10.  Quantification of regional DNA methylation by liquid chromatography/tandem mass spectrometry.

Authors:  Zhongfa Liu; Jiejun Wu; Zhiliang Xie; Shujun Liu; Patty Fan-Havard; Tim H-M Huang; Christoph Plass; Guido Marcucci; Kenneth K Chan
Journal:  Anal Biochem       Date:  2009-05-12       Impact factor: 3.365

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