Literature DB >> 15477652

Pyrosequencing: sequence typing at the speed of light.

Matthew A Diggle1, Stuart C Clarke.   

Abstract

Nucleotide sequencing is an established method for gaining information relating to partial gene, whole gene, or whole genome sequence. Here we describe some of the background leading to the advent of modern nucleotide sequencing and how it has led to the development of Pyrosequencing, a relatively new method for real-time nucleotide sequencing. In particular, we describe how this method can be used for typing bacterial pathogens.

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Year:  2004        PMID: 15477652     DOI: 10.1385/mb:28:2:129

Source DB:  PubMed          Journal:  Mol Biotechnol        ISSN: 1073-6085            Impact factor:   2.695


  54 in total

1.  Microbial genome sequencing: a new era for research on enteric pathogens.

Authors:  B Bourke
Journal:  J Pediatr Gastroenterol Nutr       Date:  1999-10       Impact factor: 2.839

Review 2.  Molecular techniques: divide or share.

Authors:  M Boxer
Journal:  J Clin Pathol       Date:  2000-01       Impact factor: 3.411

3.  Assessing allele frequencies of single nucleotide polymorphisms in DNA pools by pyrosequencing technology.

Authors:  Jon Wasson; Gary Skolnick; Latisha Love-Gregory; M Alan Permutt
Journal:  Biotechniques       Date:  2002-05       Impact factor: 1.993

4.  Identification of randomly selected colonies of lactobacilli from normal vaginal fluid by pyrosequencing of the 16S rDNA variable V1 and V3 regions.

Authors:  Maria Tärnberg; Tell Jakobsson; Jon Jonasson; Urban Forsum
Journal:  APMIS       Date:  2002-11       Impact factor: 3.205

5.  Pyrosequencing AB.

Authors:  Theresa McNeely
Journal:  Pharmacogenomics       Date:  2003-03       Impact factor: 2.533

6.  Rapid molecular identification and subtyping of Helicobacter pylori by pyrosequencing of the 16S rDNA variable V1 and V3 regions.

Authors:  H Monstein; S Nikpour-Badr; J Jonasson
Journal:  FEMS Microbiol Lett       Date:  2001-05-15       Impact factor: 2.742

7.  Quantitative estimation of viral fitness using Pyrosequencing.

Authors:  Frederick C Lahser; Jacquelyn Wright-Minogue; Angela Skelton; Bruce A Malcolm
Journal:  Biotechniques       Date:  2003-01       Impact factor: 1.993

8.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

9.  Some recent studies on the composition and structure of nucleic acids.

Authors:  E CHARGAFF
Journal:  J Cell Physiol Suppl       Date:  1951-07

10.  Detection of the causal mutation for canine leukocyte adhesion deficiency (CLAD) using pyrosequencing.

Authors:  J M Kijas; R K Juneja; S Gäfvert; L Andersson
Journal:  Anim Genet       Date:  2000-10       Impact factor: 3.169

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  12 in total

1.  Evaluation of pyrosequencing for detecting extensively drug-resistant Mycobacterium tuberculosis among clinical isolates from four high-burden countries.

Authors:  Kanchan Ajbani; Shou-Yean Grace Lin; Camilla Rodrigues; Duylinh Nguyen; Francine Arroyo; Janice Kaping; Lynn Jackson; Richard S Garfein; Donald Catanzaro; Kathleen Eisenach; Thomas C Victor; Valeru Crudu; Maria Tarcela Gler; Nazir Ismail; Edward Desmond; Antonino Catanzaro; Timothy C Rodwell
Journal:  Antimicrob Agents Chemother       Date:  2014-11-03       Impact factor: 5.191

2.  GenoType MTBDRsl for molecular detection of second-line-drug and ethambutol resistance in Mycobacterium tuberculosis strains and clinical samples.

Authors:  A Lacoma; N García-Sierra; C Prat; J Maldonado; J Ruiz-Manzano; L Haba; P Gavin; S Samper; V Ausina; J Domínguez
Journal:  J Clin Microbiol       Date:  2011-11-09       Impact factor: 5.948

3.  Pyrosequencing for rapid molecular detection of rifampin and isoniazid resistance in Mycobacterium tuberculosis strains and clinical specimens.

Authors:  N García-Sierra; A Lacoma; C Prat; L Haba; J Maldonado; J Ruiz-Manzano; P Gavin; S Samper; V Ausina; J Domínguez
Journal:  J Clin Microbiol       Date:  2011-08-03       Impact factor: 5.948

4.  Use of a high-throughput in vitro microfluidic system to develop oral multi-species biofilms.

Authors:  Derek S Samarian; Nicholas S Jakubovics; Ting L Luo; Alexander H Rickard
Journal:  J Vis Exp       Date:  2014-12-01       Impact factor: 1.355

5.  Pyrosequencing for rapid detection of extensively drug-resistant Mycobacterium tuberculosis in clinical isolates and clinical specimens.

Authors:  S-Y Grace Lin; Timothy C Rodwell; Thomas C Victor; Errin C Rider; Lucy Pham; Antonino Catanzaro; Edward P Desmond
Journal:  J Clin Microbiol       Date:  2013-11-27       Impact factor: 5.948

6.  Picoliter DNA sequencing chemistry on an electrowetting-based digital microfluidic platform.

Authors:  Erin R Ferguson Welch; Yan-You Lin; Andrew Madison; Richard B Fair
Journal:  Biotechnol J       Date:  2010-12-17       Impact factor: 4.677

7.  Pyrosequencing using the single-nucleotide polymorphism protocol for rapid determination of TEM- and SHV-type extended-spectrum beta-lactamases in clinical isolates and identification of the novel beta-lactamase genes blaSHV-48, blaSHV-105, and blaTEM-155.

Authors:  C Hal Jones; Alexey Ruzin; Margareta Tuckman; Melissa A Visalli; Peter J Petersen; Patricia A Bradford
Journal:  Antimicrob Agents Chemother       Date:  2008-12-15       Impact factor: 5.191

8.  Evidence for polymicrobic flora translocating in peripheral blood of HIV-infected patients with poor immune response to antiretroviral therapy.

Authors:  Esther Merlini; Francesca Bai; Giusi Maria Bellistrì; Camilla Tincati; Antonella d'Arminio Monforte; Giulia Marchetti
Journal:  PLoS One       Date:  2011-04-11       Impact factor: 3.240

9.  Rapid detection and subtyping of human influenza A viruses and reassortants by pyrosequencing.

Authors:  Yi-Mo Deng; Natalie Caldwell; Ian G Barr
Journal:  PLoS One       Date:  2011-08-19       Impact factor: 3.240

10.  The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide.

Authors:  Konstantinos Liolios; Nektarios Tavernarakis; Philip Hugenholtz; Nikos C Kyrpides
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

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