Literature DB >> 11953757

Structural basis of translational control by Escherichia coli threonyl tRNA synthetase.

Alfredo Torres-Larios1, Anne-Catherine Dock-Bregeon, Pascale Romby, Bernard Rees, Rajan Sankaranarayanan, Joel Caillet, Mathias Springer, Chantal Ehresmann, Bernard Ehresmann, Dino Moras.   

Abstract

Escherichia coli threonyl-tRNA synthetase (ThrRS) represses the translation of its own messenger RNA by binding to an operator located upstream of the initiation codon. The crystal structure of the complex between the core of ThrRS and the essential domain of the operator shows that the mRNA uses the recognition mode of the tRNA anticodon loop to initiate binding. The final positioning of the operator, upon which the control mechanism is based, relies on a characteristic RNA motif adapted to the enzyme surface. The finding of other thrS operators that have this conserved motif leads to a generalization of this regulatory mechanism to a subset of Gram-negative bacteria.

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Year:  2002        PMID: 11953757     DOI: 10.1038/nsb789

Source DB:  PubMed          Journal:  Nat Struct Biol        ISSN: 1072-8368


  29 in total

1.  RNA-structural mimicry in Escherichia coli ribosomal protein L4-dependent regulation of the S10 operon.

Authors:  Ulrich Stelzl; Janice M Zengel; Marina Tovbina; Marquis Walker; Knud H Nierhaus; Lasse Lindahl; Dinshaw J Patel
Journal:  J Biol Chem       Date:  2003-05-08       Impact factor: 5.157

2.  Specific recognition of rpsO mRNA and 16S rRNA by Escherichia coli ribosomal protein S15 relies on both mimicry and site differentiation.

Authors:  Nathalie Mathy; Olivier Pellegrini; Alexander Serganov; Dinshaw J Patel; Chantal Ehresmann; Claude Portier
Journal:  Mol Microbiol       Date:  2004-05       Impact factor: 3.501

Review 3.  Predicting and modeling RNA architecture.

Authors:  Eric Westhof; Benoît Masquida; Fabrice Jossinet
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-02-01       Impact factor: 10.005

4.  Ancestral AlaX editing enzymes for control of genetic code fidelity are not tRNA-specific.

Authors:  Eva Maria Novoa; Oscar Vargas-Rodriguez; Stefanie Lange; Yuki Goto; Hiroaki Suga; Karin Musier-Forsyth; Lluís Ribas de Pouplana
Journal:  J Biol Chem       Date:  2015-02-27       Impact factor: 5.157

5.  A novel processive mechanism for DNA synthesis revealed by structure, modeling and mutagenesis of the accessory subunit of human mitochondrial DNA polymerase.

Authors:  Li Fan; Sangbumn Kim; Carol L Farr; Kevin T Schaefer; Kathleen M Randolph; John A Tainer; Laurie S Kaguni
Journal:  J Mol Biol       Date:  2006-03-15       Impact factor: 5.469

6.  Two conformations of a crystalline human tRNA synthetase-tRNA complex: implications for protein synthesis.

Authors:  Xiang-Lei Yang; Francella J Otero; Karla L Ewalt; Jianming Liu; Manal A Swairjo; Caroline Köhrer; Uttam L RajBhandary; Robert J Skene; Duncan E McRee; Paul Schimmel
Journal:  EMBO J       Date:  2006-05-25       Impact factor: 11.598

7.  Expression, purification and preliminary X-ray diffraction studies of the transcriptional factor PyrR from Bacillus halodurans.

Authors:  Rodrigo Arreola; Anita Vega-Miranda; Armando Gómez-Puyou; Ruy Pérez-Montfort; Enrique Merino-Pérez; Alfredo Torres-Larios
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2008-07-05

Review 8.  Aminoacyl-tRNA synthetase complexes: molecular multitasking revealed.

Authors:  Corinne D Hausmann; Michael Ibba
Journal:  FEMS Microbiol Rev       Date:  2008-06-03       Impact factor: 16.408

9.  A domain for editing by an archaebacterial tRNA synthetase.

Authors:  Kirk Beebe; Eve Merriman; Lluis Ribas De Pouplana; Paul Schimmel
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-12       Impact factor: 11.205

10.  RNAMotifScan: automatic identification of RNA structural motifs using secondary structural alignment.

Authors:  Cuncong Zhong; Haixu Tang; Shaojie Zhang
Journal:  Nucleic Acids Res       Date:  2010-08-08       Impact factor: 16.971

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