Literature DB >> 18678934

Expression, purification and preliminary X-ray diffraction studies of the transcriptional factor PyrR from Bacillus halodurans.

Rodrigo Arreola1, Anita Vega-Miranda, Armando Gómez-Puyou, Ruy Pérez-Montfort, Enrique Merino-Pérez, Alfredo Torres-Larios.   

Abstract

The PyrR transcriptional regulator is widely distributed in bacteria. This RNA-binding protein is involved in the control of genes involved in pyrimidine biosynthesis, in which uridyl and guanyl nucleotides function as effectors. Here, the crystallization and preliminary X-ray diffraction analysis of two crystal forms of Bacillus halodurans PyrR are reported. One of the forms belongs to the monoclinic space group P2(1) with unit-cell parameters a = 59.7, b = 87.4, c = 72.1 A, beta = 104.4 degrees , while the other form belongs to the orthorhombic space group P22(1)2(1) with unit-cell parameters a = 72.7, b = 95.9, c = 177.1 A. Preliminary X-ray diffraction data analysis and molecular-replacement solution revealed the presence of four and six monomers per asymmetric unit; a crystallographic tetramer is formed in both forms.

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Year:  2008        PMID: 18678934      PMCID: PMC2494968          DOI: 10.1107/S1744309108018307

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  17 in total

1.  Molecular recognition of pyr mRNA by the Bacillus subtilis attenuation regulatory protein PyrR.

Authors:  E R Bonner; J N D'Elia; B K Billips; R L Switzer
Journal:  Nucleic Acids Res       Date:  2001-12-01       Impact factor: 16.971

2.  Structural basis of translational control by Escherichia coli threonyl tRNA synthetase.

Authors:  Alfredo Torres-Larios; Anne-Catherine Dock-Bregeon; Pascale Romby; Bernard Rees; Rajan Sankaranarayanan; Joel Caillet; Mathias Springer; Chantal Ehresmann; Bernard Ehresmann; Dino Moras
Journal:  Nat Struct Biol       Date:  2002-05

3.  Characterization of the interaction of Bacillus subtilis PyrR with pyr mRNA by site-directed mutagenesis of the protein.

Authors:  Heather K Savacool; Robert L Switzer
Journal:  J Bacteriol       Date:  2002-05       Impact factor: 3.490

4.  Structure of pyrR (Rv1379) from Mycobacterium tuberculosis: a persistence gene and protein drug target.

Authors:  Katherine A Kantardjieff; Carolina Vasquez; Peter Castro; Nancy M Warfel; Beom Seop Rho; Timothy Lekin; Chang Yub Kim; Brent W Segelke; Thomas C Terwilliger; Bernhard Rupp
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2005-03-24

5.  Structure of the nucleotide complex of PyrR, the pyr attenuation protein from Bacillus caldolyticus, suggests dual regulation by pyrimidine and purine nucleotides.

Authors:  Preethi Chander; Kari M Halbig; Jamie K Miller; Christopher J Fields; Heather K S Bonner; Gail K Grabner; Robert L Switzer; Janet L Smith
Journal:  J Bacteriol       Date:  2005-03       Impact factor: 3.490

6.  Adaptation of an enzyme to regulatory function: structure of Bacillus subtilis PyrR, a pyr RNA-binding attenuation protein and uracil phosphoribosyltransferase.

Authors:  D R Tomchick; R J Turner; R L Switzer; J L Smith
Journal:  Structure       Date:  1998-03-15       Impact factor: 5.006

7.  Regulation of pyr gene expression in Mycobacterium smegmatis by PyrR-dependent translational repression.

Authors:  Christopher J Fields; Robert L Switzer
Journal:  J Bacteriol       Date:  2007-06-29       Impact factor: 3.490

8.  RibEx: a web server for locating riboswitches and other conserved bacterial regulatory elements.

Authors:  Cei Abreu-Goodger; Enrique Merino
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

9.  Rfam: annotating non-coding RNAs in complete genomes.

Authors:  Sam Griffiths-Jones; Simon Moxon; Mhairi Marshall; Ajay Khanna; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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