Literature DB >> 11945035

Direct conversion of EPR dipolar time evolution data to distance distributions.

Gunnar Jeschke1, Achim Koch, Ulrich Jonas, Adelheid Godt.   

Abstract

Shallow electron spin echo envelope modulations due to dipole-dipole couplings between electron spins provide information on the radial distribution function of the spins in disordered systems while angular correlations between spin pairs are negligible. Under these conditions and in the absence of orientational selection, the dipolar time evolution data can be quantitatively simulated for arbitrary radial distribution functions by shell factorization, i.e., by performing the orientational average separately for thin spherical shells and multiplying the signals of all the shells. For distances below 5 nm, a linear superposition of the signals of the shells is sufficient. The dipolar time evolution data can be separated into this linear contribution and a nonlinear background. The linear contribution can then be converted directly to a radial distribution function. For a series of shape-persistent and flexible biradicals with end-to-end distances between 2 and 5 nm, shell factorization and direct conversion of the data are in good agreement with each other and with force-field computations of the end-to-end distances. The neglect of orientation selection does not cause significant distortions of the determined distance distributions. (c) 2002 Elsevier Science (USA).

Entities:  

Year:  2002        PMID: 11945035     DOI: 10.1006/jmre.2001.2498

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  56 in total

1.  Interresidual distance determination by four-pulse double electron-electron resonance in an integral membrane protein: the Na+/proline transporter PutP of Escherichia coli.

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2.  Algorithm for selection of optimized EPR distance restraints for de novo protein structure determination.

Authors:  Kelli Kazmier; Nathan S Alexander; Jens Meiler; Hassane S McHaourab
Journal:  J Struct Biol       Date:  2010-11-11       Impact factor: 2.867

3.  Spin labeling and Double Electron-Electron Resonance (DEER) to Deconstruct Conformational Ensembles of HIV Protease.

Authors:  Thomas M Casey; Gail E Fanucci
Journal:  Methods Enzymol       Date:  2015-09-01       Impact factor: 1.600

4.  High-resolution structure of a Na+/H+ antiporter dimer obtained by pulsed electron paramagnetic resonance distance measurements.

Authors:  D Hilger; Y Polyhach; E Padan; H Jung; G Jeschke
Journal:  Biophys J       Date:  2007-08-17       Impact factor: 4.033

5.  Electron spin resonance shows common structural features for different classes of EcoRI-DNA complexes.

Authors:  Katherine M Stone; Jacqueline E Townsend; Jessica Sarver; Paul J Sapienza; Sunil Saxena; Linda Jen-Jacobson
Journal:  Angew Chem Int Ed Engl       Date:  2008       Impact factor: 15.336

6.  Structure of self-aggregated alamethicin in ePC membranes detected by pulsed electron-electron double resonance and electron spin echo envelope modulation spectroscopies.

Authors:  Alexander D Milov; Rimma I Samoilova; Yuri D Tsvetkov; Marta De Zotti; Fernando Formaggio; Claudio Toniolo; Jan-Willem Handgraaf; Jan Raap
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

7.  Protonation-dependent conformational variability of intrinsically disordered proteins.

Authors:  Leonhard Geist; Morkos A Henen; Sandra Haiderer; Thomas C Schwarz; Dennis Kurzbach; Anna Zawadzka-Kazimierczuk; Saurabh Saxena; Szymon Zerko; Wiktor Koźmiński; Dariush Hinderberger; Robert Konrat
Journal:  Protein Sci       Date:  2013-09       Impact factor: 6.725

8.  Site-directed spectroscopy of cardiac myosin-binding protein C reveals effects of phosphorylation on protein structural dynamics.

Authors:  Brett A Colson; Andrew R Thompson; L Michel Espinoza-Fonseca; David D Thomas
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-23       Impact factor: 11.205

9.  Distance measurements on a dual-labeled TOAC AChR M2δ peptide in mechanically aligned DMPC bilayers via dipolar broadening CW-EPR spectroscopy.

Authors:  Harishchandra Ghimire; Eric J Hustedt; Indra D Sahu; Johnson J Inbaraj; Robert McCarrick; Daniel J Mayo; Monica R Benedikt; Ryan T Lee; Stuart M Grosser; Gary A Lorigan
Journal:  J Phys Chem B       Date:  2012-03-19       Impact factor: 2.991

10.  Probing the (H3-H4)2 histone tetramer structure using pulsed EPR spectroscopy combined with site-directed spin labelling.

Authors:  Andrew Bowman; Richard Ward; Hassane El-Mkami; Tom Owen-Hughes; David G Norman
Journal:  Nucleic Acids Res       Date:  2009-11-13       Impact factor: 16.971

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