Literature DB >> 14506293

Chromosome rearrangements in evolution: From gene order to genome sequence and back.

David Sankoff1, Joseph H Nadeau.   

Abstract

Mesh:

Year:  2003        PMID: 14506293      PMCID: PMC208729          DOI: 10.1073/pnas.2035002100

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


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  13 in total

1.  GRIMM: genome rearrangements web server.

Authors:  Glenn Tesler
Journal:  Bioinformatics       Date:  2002-03       Impact factor: 6.937

Review 2.  The complex structure and dynamic evolution of human subtelomeres.

Authors:  Heather C Mefford; Barbara J Trask
Journal:  Nat Rev Genet       Date:  2002-02       Impact factor: 53.242

3.  Recent segmental duplications in the human genome.

Authors:  Jeffrey A Bailey; Zhiping Gu; Royden A Clark; Knut Reinert; Rhea V Samonte; Stuart Schwartz; Mark D Adams; Eugene W Myers; Peter W Li; Evan E Eichler
Journal:  Science       Date:  2002-08-09       Impact factor: 47.728

4.  The male-specific region of the human Y chromosome is a mosaic of discrete sequence classes.

Authors:  Helen Skaletsky; Tomoko Kuroda-Kawaguchi; Patrick J Minx; Holland S Cordum; LaDeana Hillier; Laura G Brown; Sjoerd Repping; Tatyana Pyntikova; Johar Ali; Tamberlyn Bieri; Asif Chinwalla; Andrew Delehaunty; Kim Delehaunty; Hui Du; Ginger Fewell; Lucinda Fulton; Robert Fulton; Tina Graves; Shun-Fang Hou; Philip Latrielle; Shawn Leonard; Elaine Mardis; Rachel Maupin; John McPherson; Tracie Miner; William Nash; Christine Nguyen; Philip Ozersky; Kymberlie Pepin; Susan Rock; Tracy Rohlfing; Kelsi Scott; Brian Schultz; Cindy Strong; Aye Tin-Wollam; Shiaw-Pyng Yang; Robert H Waterston; Richard K Wilson; Steve Rozen; David C Page
Journal:  Nature       Date:  2003-06-19       Impact factor: 49.962

5.  Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes.

Authors:  W James Kent; Robert Baertsch; Angie Hinrichs; Webb Miller; David Haussler
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-19       Impact factor: 11.205

6.  Ancient linkage groups and frozen accidents.

Authors:  S Ono
Journal:  Nature       Date:  1973-08-03       Impact factor: 49.962

7.  Fourfold faster rate of genome rearrangement in nematodes than in Drosophila.

Authors:  Avril Coghlan; Kenneth H Wolfe
Journal:  Genome Res       Date:  2002-06       Impact factor: 9.043

8.  Prevalence of small inversions in yeast gene order evolution.

Authors:  C Seoighe; N Federspiel; T Jones; N Hansen; V Bivolarovic; R Surzycki; R Tamse; C Komp; L Huizar; R W Davis; S Scherer; E Tait; D J Shaw; D Harris; L Murphy; K Oliver; K Taylor; M A Rajandream; B G Barrell; K H Wolfe
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

9.  Human and mouse genomic sequences reveal extensive breakpoint reuse in mammalian evolution.

Authors:  Pavel Pevzner; Glenn Tesler
Journal:  Proc Natl Acad Sci U S A       Date:  2003-06-16       Impact factor: 11.205

10.  Genome rearrangements in mammalian evolution: lessons from human and mouse genomes.

Authors:  Pavel Pevzner; Glenn Tesler
Journal:  Genome Res       Date:  2003-01       Impact factor: 9.043

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  16 in total

1.  Phosphorylation of yeast transcription factors correlates with the evolution of novel sequence and function.

Authors:  Mark Kaganovich; Michael Snyder
Journal:  J Proteome Res       Date:  2011-12-09       Impact factor: 4.466

Review 2.  Addressing chromosome evolution in the whole-genome sequence era.

Authors:  Thomas Faraut
Journal:  Chromosome Res       Date:  2008       Impact factor: 5.239

3.  Autosomal similarity revealed by eukaryotic genomic comparison.

Authors:  Zhen Qi; Yan Cui; Weiwu Fang; Lunjiang Ling; Runsheng Chen
Journal:  J Biol Phys       Date:  2004-01       Impact factor: 1.365

4.  A novel construction of genome space with biological geometry.

Authors:  Chenglong Yu; Qian Liang; Changchuan Yin; Rong L He; Stephen S-T Yau
Journal:  DNA Res       Date:  2010-04-01       Impact factor: 4.458

5.  Reconstructing the genomic architecture of ancestral mammals: lessons from human, mouse, and rat genomes.

Authors:  Guillaume Bourque; Pavel A Pevzner; Glenn Tesler
Journal:  Genome Res       Date:  2004-04       Impact factor: 9.043

6.  Whole-genome microsynteny-based phylogeny of angiosperms.

Authors:  Tao Zhao; Arthur Zwaenepoel; Jia-Yu Xue; Shu-Min Kao; Zhen Li; M Eric Schranz; Yves Van de Peer
Journal:  Nat Commun       Date:  2021-06-09       Impact factor: 14.919

7.  ALF--a simulation framework for genome evolution.

Authors:  Daniel A Dalquen; Maria Anisimova; Gaston H Gonnet; Christophe Dessimoz
Journal:  Mol Biol Evol       Date:  2011-12-08       Impact factor: 16.240

8.  The signal in the genomes.

Authors:  David Sankoff
Journal:  PLoS Comput Biol       Date:  2006-04       Impact factor: 4.475

9.  An integrative method for accurate comparative genome mapping.

Authors:  Firas Swidan; Eduardo P C Rocha; Michael Shmoish; Ron Y Pinter
Journal:  PLoS Comput Biol       Date:  2006-05-15       Impact factor: 4.475

10.  Long-range regulation is a major driving force in maintaining genome integrity.

Authors:  Emmanuel Mongin; Ken Dewar; Mathieu Blanchette
Journal:  BMC Evol Biol       Date:  2009-08-15       Impact factor: 3.260

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