Literature DB >> 11919626

Molecular dynamics simulation of the ice nucleation and growth process leading to water freezing.

Masakazu Matsumoto1, Shinji Saito, Iwao Ohmine.   

Abstract

Upon cooling, water freezes to ice. This familiar phase transition occurs widely in nature, yet unlike the freezing of simple liquids, it has never been successfully simulated on a computer. The difficulty lies with the fact that hydrogen bonding between individual water molecules yields a disordered three-dimensional hydrogen-bond network whose rugged and complex global potential energy surface permits a large number of possible network configurations. As a result, it is very challenging to reproduce the freezing of 'real' water into a solid with a unique crystalline structure. For systems with a limited number of possible disordered hydrogen-bond network structures, such as confined water, it is relatively easy to locate a pathway from a liquid state to a crystalline structure. For pure and spatially unconfined water, however, molecular dynamics simulations of freezing are severely hampered by the large number of possible network configurations that exist. Here we present a molecular dynamics trajectory that captures the molecular processes involved in the freezing of pure water. We find that ice nucleation occurs once a sufficient number of relatively long-lived hydrogen bonds develop spontaneously at the same location to form a fairly compact initial nucleus. The initial nucleus then slowly changes shape and size until it reaches a stage that allows rapid expansion, resulting in crystallization of the entire system.

Entities:  

Year:  2002        PMID: 11919626     DOI: 10.1038/416409a

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  40 in total

1.  Structural transformation in supercooled water controls the crystallization rate of ice.

Authors:  Emily B Moore; Valeria Molinero
Journal:  Nature       Date:  2011-11-23       Impact factor: 49.962

2.  Effect of PEO molecular weight on the miscibility and dynamics in epoxy/PEO blends.

Authors:  Shoudong Lu; Rongchun Zhang; Xiaoliang Wang; Pingchuan Sun; Weifeng Lv; Qingjie Liu; Ninghong Jia
Journal:  Eur Phys J E Soft Matter       Date:  2015-11-20       Impact factor: 1.890

3.  Direct calculation of ice homogeneous nucleation rate for a molecular model of water.

Authors:  Amir Haji-Akbari; Pablo G Debenedetti
Journal:  Proc Natl Acad Sci U S A       Date:  2015-08-03       Impact factor: 11.205

4.  Potential energy functions for atomic-level simulations of water and organic and biomolecular systems.

Authors:  William L Jorgensen; Julian Tirado-Rives
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

5.  Membrane protein dynamics and detergent interactions within a crystal: a simulation study of OmpA.

Authors:  Peter J Bond; José D Faraldo-Gómez; Sundeep S Deol; Mark S P Sansom
Journal:  Proc Natl Acad Sci U S A       Date:  2006-06-09       Impact factor: 11.205

6.  TIGER2: an improved algorithm for temperature intervals with global exchange of replicas.

Authors:  Xianfeng Li; Robert A Latour; Steven J Stuart
Journal:  J Chem Phys       Date:  2009-05-07       Impact factor: 3.488

7.  Defect pair separation as the controlling step in homogeneous ice melting.

Authors:  Kenji Mochizuki; Masakazu Matsumoto; Iwao Ohmine
Journal:  Nature       Date:  2013-06-20       Impact factor: 49.962

8.  Entropic effect on the rate of dislocation nucleation.

Authors:  Seunghwa Ryu; Keonwook Kang; Wei Cai
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-14       Impact factor: 11.205

9.  Square ice in graphene nanocapillaries.

Authors:  G Algara-Siller; O Lehtinen; F C Wang; R R Nair; U Kaiser; H A Wu; A K Geim; I V Grigorieva
Journal:  Nature       Date:  2015-03-26       Impact factor: 49.962

10.  More than the sum of its parts: coarse-grained peptide-lipid interactions from a simple cross-parametrization.

Authors:  Tristan Bereau; Zun-Jing Wang; Markus Deserno
Journal:  J Chem Phys       Date:  2014-03-21       Impact factor: 3.488

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.