Literature DB >> 11910018

Structural genomics: a pipeline for providing structures for the biologist.

Mark R Chance1, Anne R Bresnick, Stephen K Burley, Jian-Sheng Jiang, Christopher D Lima, Andrej Sali, Steven C Almo, Jeffrey B Bonanno, John A Buglino, Simon Boulton, Hua Chen, Narayanan Eswar, Guoshun He, Raymond Huang, Valentin Ilyin, Linda McMahan, Ursula Pieper, Soumya Ray, Marc Vidal, Li Kai Wang.   

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Year:  2002        PMID： 11910018      PMCID： PMC2373525          DOI： 10.1110/ps.4570102

Source DB:  PubMed          Journal:  Protein Sci        ISSN： 0961-8368            Impact factor:   6.725


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  50 in total

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2.  Structural genomics in North America.

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Journal:  Nat Struct Biol       Date:  2000-11

3.  Protein structure prediction and structural genomics.

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Journal:  Science       Date:  2001-10-05       Impact factor: 47.728

4.  High-throughput yeast two-hybrid assays for large-scale protein interaction mapping.

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5.  Target practice.

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6.  Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.

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Journal:  Proteins       Date:  1991

7.  Structure of isopenicillin N synthase complexed with substrate and the mechanism of penicillin formation.

Authors:  P L Roach; I J Clifton; C M Hensgens; N Shibata; C J Schofield; J Hajdu; J E Baldwin
Journal:  Nature       Date:  1997-06-19       Impact factor: 49.962

8.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
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9.  Crystal structure of a NAD-dependent D-glycerate dehydrogenase at 2.4 A resolution.

Authors:  J D Goldberg; T Yoshida; P Brick
Journal:  J Mol Biol       Date:  1994-03-04       Impact factor: 5.469

10.  Large-scale protein structure modeling of the Saccharomyces cerevisiae genome.

Authors:  R Sánchez; A Sali
Journal:  Proc Natl Acad Sci U S A       Date:  1998-11-10       Impact factor: 11.205
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  56 in total

1.  MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison.

Authors:  Angel R Ortiz; Charlie E M Strauss; Osvaldo Olmea
Journal:  Protein Sci       Date:  2002-11       Impact factor: 6.725

2.  FoldMiner: structural motif discovery using an improved superposition algorithm.

Authors:  Jessica Shapiro; Douglas Brutlag
Journal:  Protein Sci       Date:  2004-01       Impact factor: 6.725

3.  Automated protein fold determination using a minimal NMR constraint strategy.

Authors:  Deyou Zheng; Yuanpeng J Huang; Hunter N B Moseley; Rong Xiao; James Aramini; G V T Swapna; Gaetano T Montelione
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4.  MODBASE, a database of annotated comparative protein structure models, and associated resources.

Authors:  Ursula Pieper; Narayanan Eswar; Hannes Braberg; M S Madhusudhan; Fred P Davis; Ashley C Stuart; Nebojsa Mirkovic; Andrea Rossi; Marc A Marti-Renom; Andras Fiser; Ben Webb; Daniel Greenblatt; Conrad C Huang; Thomas E Ferrin; Andrej Sali
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

5.  The Structure Superposition Database.

Authors:  Ranyee A Chiang; Elaine C Meng; Conrad C Huang; Thomas E Ferrin; Patricia C Babbitt
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

6.  Servers for sequence-structure relationship analysis and prediction.

Authors:  Zsuzsanna Dosztányi; Csaba Magyar; Gábor E Tusnády; Miklós Cserzo; András Fiser; István Simon
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

Review 7.  Structural genomics: computational methods for structure analysis.

Authors:  Sharon Goldsmith-Fischman; Barry Honig
Journal:  Protein Sci       Date:  2003-09       Impact factor: 6.725

8.  A Structural-informatics approach for tracing beta-sheets: building pseudo-C(alpha) traces for beta-strands in intermediate-resolution density maps.

Authors:  Yifei Kong; Xing Zhang; Timothy S Baker; Jianpeng Ma
Journal:  J Mol Biol       Date:  2004-05-21       Impact factor: 5.469

9.  New enzymes from environmental cassette arrays: functional attributes of a phosphotransferase and an RNA-methyltransferase.

Authors:  Blair S Nield; Robert D Willows; Andrew E Torda; Michael R Gillings; Andrew J Holmes; K M Helena Nevalainen; H W Stokes; Bridget C Mabbutt
Journal:  Protein Sci       Date:  2004-06       Impact factor: 6.725

10.  High-throughput expression of C. elegans proteins.

Authors:  Chi-Hao Luan; Shihong Qiu; James B Finley; Mike Carson; Rita J Gray; Wenying Huang; David Johnson; Jun Tsao; Jérôme Reboul; Philippe Vaglio; David E Hill; Marc Vidal; Lawrence J Delucas; Ming Luo
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043
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