Literature DB >> 11891116

"Omic" approaches for unraveling signaling networks.

Heng Zhu1, Michael Snyder.   

Abstract

Signaling pathways are crucial for cell differentiation and response to cellular environments. Recently, a large number of approaches for the global analysis of genes and proteins have been described. These have provided important new insights into the components of different pathways and the molecular and cellular responses of these pathways. This review covers genomic and proteomic (collectively referred to as "omic") approaches for the global analysis of cell signaling, including gene expression profiling and analysis, protein-protein interaction methods, protein microarrays, mass spectroscopy and gene-disruption and engineering approaches.

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Year:  2002        PMID: 11891116     DOI: 10.1016/s0955-0674(02)00315-0

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  16 in total

1.  A simple physical model for binding energy hot spots in protein-protein complexes.

Authors:  Tanja Kortemme; David Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-15       Impact factor: 11.205

Review 2.  Network genomics--a novel approach for the analysis of biological systems in the post-genomic era.

Authors:  Christian V Forst
Journal:  Mol Biol Rep       Date:  2002-09       Impact factor: 2.316

3.  ORFDB: an information resource linking scientific content to a high-quality Open Reading Frame (ORF) collection.

Authors:  Feng Liang; Udayakumar Matrubutham; Babak Parvizi; Jessica Yen; Daniel Duan; Jyotika Mirchandani; Sandra Hashima; Uyen Nguyen; Eric Ubil; Jake Loewenheim; Xin Yu; Sara Sipes; Wendy Williams; Ling Wang; Robert Bennett; John Carrino
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

Review 4.  Control of male gametophyte development.

Authors:  Sheila McCormick
Journal:  Plant Cell       Date:  2004-03-22       Impact factor: 11.277

Review 5.  Dude, where's my phenotype? Dealing with redundancy in signaling networks.

Authors:  Sean Cutler; Peter McCourt
Journal:  Plant Physiol       Date:  2005-06       Impact factor: 8.340

Review 6.  From components to regulatory motifs in signalling networks.

Authors:  Avi Ma'ayan; Ravi Iyengar
Journal:  Brief Funct Genomic Proteomic       Date:  2006-02-20

7.  Antibody-array interaction mapping, a new method to detect protein complexes applied to the discovery and study of serum amyloid P interactions with kininogen in human plasma.

Authors:  Derek Bergsma; Songming Chen; John Buchweitz; Robert Gerszten; Brian B Haab
Journal:  Mol Cell Proteomics       Date:  2009-12-18       Impact factor: 5.911

8.  An ion-channel-containing model membrane: structural determination by magnetic contrast neutron reflectometry.

Authors:  Stephen A Holt; Anton P Le Brun; Charles F Majkrzak; Duncan J McGillivray; Frank Heinrich; Mathias Lösche; Jeremy H Lakey
Journal:  Soft Matter       Date:  2009       Impact factor: 3.679

9.  Protein conformational changes studied by diffusion NMR spectroscopy: application to helix-loop-helix calcium binding proteins.

Authors:  Aalim M Weljie; Aaron P Yamniuk; Hidenori Yoshino; Yoshinobu Izumi; Hans J Vogel
Journal:  Protein Sci       Date:  2003-02       Impact factor: 6.725

Review 10.  Integration of molecular functions at the ecosystemic level: breakthroughs and future goals of environmental genomics and post-genomics.

Authors:  Philippe Vandenkoornhuyse; Alexis Dufresne; Achim Quaiser; Gwenola Gouesbet; Françoise Binet; André-Jean Francez; Stéphane Mahé; Myriam Bormans; Yvan Lagadeuc; Ivan Couée
Journal:  Ecol Lett       Date:  2010-04-21       Impact factor: 9.492

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