Literature DB >> 12463419

Network genomics--a novel approach for the analysis of biological systems in the post-genomic era.

Christian V Forst1.   

Abstract

Network Genomics studies genomics and proteomics foundations of cellular networks in biological systems. It complements systems biology in providing information on elements, their interaction and their functional interplay in cellular networks. The relationship between genomic and proteomic high-throughput technologies and computational methods are described, as well as several examples of specific network genomic application are presented.

Mesh:

Year:  2002        PMID: 12463419     DOI: 10.1023/a:1020437311167

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  54 in total

1.  Evolution of metabolisms: a new method for the comparison of metabolic pathways using genomics information.

Authors:  C V Forst; K Schulten
Journal:  J Comput Biol       Date:  1999 Fall-Winter       Impact factor: 1.479

2.  Computational genetics: finding protein function by nonhomology methods.

Authors:  E M Marcotte
Journal:  Curr Opin Struct Biol       Date:  2000-06       Impact factor: 6.809

3.  Inferring subnetworks from perturbed expression profiles.

Authors:  D Pe'er; A Regev; G Elidan; N Friedman
Journal:  Bioinformatics       Date:  2001       Impact factor: 6.937

4.  Functional organization of the yeast proteome by systematic analysis of protein complexes.

Authors:  Anne-Claude Gavin; Markus Bösche; Roland Krause; Paola Grandi; Martina Marzioch; Andreas Bauer; Jörg Schultz; Jens M Rick; Anne-Marie Michon; Cristina-Maria Cruciat; Marita Remor; Christian Höfert; Malgorzata Schelder; Miro Brajenovic; Heinz Ruffner; Alejandro Merino; Karin Klein; Manuela Hudak; David Dickson; Tatjana Rudi; Volker Gnau; Angela Bauch; Sonja Bastuck; Bettina Huhse; Christina Leutwein; Marie-Anne Heurtier; Richard R Copley; Angela Edelmann; Erich Querfurth; Vladimir Rybin; Gerard Drewes; Manfred Raida; Tewis Bouwmeester; Peer Bork; Bertrand Seraphin; Bernhard Kuster; Gitte Neubauer; Giulio Superti-Furga
Journal:  Nature       Date:  2002-01-10       Impact factor: 49.962

5.  Computer-aided synthesis of biochemical pathways.

Authors:  M L Mavrovouniotis; G Stephanopoulos; G Stephanopoulos
Journal:  Biotechnol Bioeng       Date:  1990-12-20       Impact factor: 4.530

Review 6.  Evolution of carbohydrate metabolic pathways.

Authors:  A H Romano; T Conway
Journal:  Res Microbiol       Date:  1996 Jul-Sep       Impact factor: 3.992

7.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

8.  In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data.

Authors:  J S Edwards; R U Ibarra; B O Palsson
Journal:  Nat Biotechnol       Date:  2001-02       Impact factor: 54.908

9.  A novel genetic system to detect protein-protein interactions.

Authors:  S Fields; O Song
Journal:  Nature       Date:  1989-07-20       Impact factor: 49.962

10.  A comprehensive two-hybrid analysis to explore the yeast protein interactome.

Authors:  T Ito; T Chiba; R Ozawa; M Yoshida; M Hattori; Y Sakaki
Journal:  Proc Natl Acad Sci U S A       Date:  2001-03-13       Impact factor: 11.205

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  7 in total

Review 1.  Glutamate receptors and signal transduction in learning and memory.

Authors:  Sheng Peng; Yan Zhang; Jiannan Zhang; Hua Wang; Bingxu Ren
Journal:  Mol Biol Rep       Date:  2010-04-03       Impact factor: 2.316

2.  Inference and Analysis of Population Structure Using Genetic Data and Network Theory.

Authors:  Gili Greenbaum; Alan R Templeton; Shirli Bar-David
Journal:  Genetics       Date:  2016-02-17       Impact factor: 4.562

Review 3.  Molecular and genetic inflammation networks in major human diseases.

Authors:  Yongzhong Zhao; Christian V Forst; Camil E Sayegh; I-Ming Wang; Xia Yang; Bin Zhang
Journal:  Mol Biosyst       Date:  2016-07-19

4.  Characterization of acute renal allograft rejection by proteomic analysis of renal tissue in rat.

Authors:  Gang Chen; Jing-Bin Huang; Jie Mi; Yun-Feng He; Xiao-Hou Wu; Chun-Li Luo; Si-Min Liang; Jia-Bing Li; Ya-Xiong Tang; Jie Li
Journal:  Mol Biol Rep       Date:  2011-05-22       Impact factor: 2.316

5.  Current awareness on comparative and functional genomics.

Authors: 
Journal:  Comp Funct Genomics       Date:  2003

Review 6.  Translational precision medicine: an industry perspective.

Authors:  Dominik Hartl; Valeria de Luca; Anna Kostikova; Jason Laramie; Scott Kennedy; Enrico Ferrero; Richard Siegel; Martin Fink; Sohail Ahmed; John Millholland; Alexander Schuhmacher; Markus Hinder; Luca Piali; Adrian Roth
Journal:  J Transl Med       Date:  2021-06-05       Impact factor: 5.531

7.  An exploration of alternative visualisations of the basic helix-loop-helix protein interaction network.

Authors:  Brian J Holden; John W Pinney; Simon C Lovell; Grigoris D Amoutzias; David L Robertson
Journal:  BMC Bioinformatics       Date:  2007-08-06       Impact factor: 3.169

  7 in total

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