Literature DB >> 16769680

From components to regulatory motifs in signalling networks.

Avi Ma'ayan1, Ravi Iyengar.   

Abstract

The developments in biochemistry and molecular biology over the past 30 years have produced an impressive parts list of cellular components. It has become increasingly clear that we need to understand how components come together to form systems. One area where this approach has been growing is cell signalling research. Here, instead of focusing on individual or small groups of signalling proteins, researchers are now using a more holistic perspective. This approach attempts to view how many components are working together in concert to process information and to orchestrate cellular phenotypic changes. Additionally, the advancements in experimental techniques to measure and visualize many cellular components at once gradually grow in diversity and accuracy. The multivariate data, produced by experiments, introduce new and exciting challenges for computational biologists, who develop models of cellular systems made up of interacting cellular components. The integration of high-throughput experimental results and information from legacy literature is expected to produce computational models that would rapidly enhance our understanding of the detail workings of mammalian cells.

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Mesh:

Year:  2006        PMID: 16769680      PMCID: PMC3035204          DOI: 10.1093/bfgp/ell004

Source DB:  PubMed          Journal:  Brief Funct Genomic Proteomic        ISSN: 1473-9550


  25 in total

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5.  Molecular networks: the top-down view.

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Journal:  Science       Date:  2003-09-26       Impact factor: 47.728

6.  The Gene Ontology (GO) database and informatics resource.

Authors:  M A Harris; J Clark; A Ireland; J Lomax; M Ashburner; R Foulger; K Eilbeck; S Lewis; B Marshall; C Mungall; J Richter; G M Rubin; J A Blake; C Bult; M Dolan; H Drabkin; J T Eppig; D P Hill; L Ni; M Ringwald; R Balakrishnan; J M Cherry; K R Christie; M C Costanzo; S S Dwight; S Engel; D G Fisk; J E Hirschman; E L Hong; R S Nash; A Sethuraman; C L Theesfeld; D Botstein; K Dolinski; B Feierbach; T Berardini; S Mundodi; S Y Rhee; R Apweiler; D Barrell; E Camon; E Dimmer; V Lee; R Chisholm; P Gaudet; W Kibbe; R Kishore; E M Schwarz; P Sternberg; M Gwinn; L Hannick; J Wortman; M Berriman; V Wood; N de la Cruz; P Tonellato; P Jaiswal; T Seigfried; R White
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

7.  The SWISS-PROT protein sequence data bank.

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Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

8.  A two-way bioinformatic street.

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Journal:  Science       Date:  2004-11-26       Impact factor: 47.728

9.  Formation of regulatory patterns during signal propagation in a Mammalian cellular network.

Authors:  Avi Ma'ayan; Sherry L Jenkins; Susana Neves; Anthony Hasseldine; Elizabeth Grace; Benjamin Dubin-Thaler; Narat J Eungdamrong; Gehzi Weng; Prahlad T Ram; J Jeremy Rice; Aaron Kershenbaum; Gustavo A Stolovitzky; Robert D Blitzer; Ravi Iyengar
Journal:  Science       Date:  2005-08-12       Impact factor: 47.728

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Authors:  Jay S Coggan; Thomas M Bartol; Eduardo Esquenazi; Joel R Stiles; Stephan Lamont; Maryann E Martone; Darwin K Berg; Mark H Ellisman; Terrence J Sejnowski
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  6 in total

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Review 2.  The cognitive phenotype of Down syndrome: insights from intracellular network analysis.

Authors:  Avi Ma'ayan; Katheleen Gardiner; Ravi Iyengar
Journal:  NeuroRx       Date:  2006-07

3.  Network analysis of FDA approved drugs and their targets.

Authors:  Avi Ma'ayan; Sherry L Jenkins; Joseph Goldfarb; Ravi Iyengar
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Review 4.  Network integration and graph analysis in mammalian molecular systems biology.

Authors:  A Ma'ayan
Journal:  IET Syst Biol       Date:  2008-09       Impact factor: 1.615

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6.  Functions of bifans in context of multiple regulatory motifs in signaling networks.

Authors:  Azi Lipshtat; Sudarshan P Purushothaman; Ravi Iyengar; Avi Ma'ayan
Journal:  Biophys J       Date:  2008-01-04       Impact factor: 4.033

  6 in total

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