Literature DB >> 11880173

A new approximate whole boundary solution of the Lamm differential equation for the analysis of sedimentation velocity experiments.

Joachim Behlke1, Otto Ristau.   

Abstract

Sedimentation velocity is one of the best-suited physical methods for determining the size and shape of macromolecular substances or their complexes in the range from 1 to several thousand kDa. The moving boundary in sedimentation velocity runs can be described by the Lamm differential equation. Fitting of suitable model functions or solutions of the Lamm equation to the moving boundary is used to obtain directly sedimentation and diffusion coefficients, thus allowing quick determination of size, shape and other parameters of macromolecules. Here we present a new approximate whole boundary solution of the Lamm equation that simultaneously allows the specification of sedimentation and diffusion coefficients with deviations smaller than 1% from the expected values.

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Year:  2002        PMID: 11880173     DOI: 10.1016/s0301-4622(01)00248-4

Source DB:  PubMed          Journal:  Biophys Chem        ISSN: 0301-4622            Impact factor:   2.352


  12 in total

1.  Development of a Model Protein Interaction Pair as a Benchmarking Tool for the Quantitative Analysis of 2-Site Protein-Protein Interactions.

Authors:  Aaron P Yamniuk; John A Newitt; Michael L Doyle; Fumio Arisaka; Anthony M Giannetti; Preston Hensley; David G Myszka; Fred P Schwarz; James A Thomson; Edward Eisenstein
Journal:  J Biomol Tech       Date:  2015-10-29

2.  Macromolecular size-and-shape distributions by sedimentation velocity analytical ultracentrifugation.

Authors:  Patrick H Brown; Peter Schuck
Journal:  Biophys J       Date:  2006-03-24       Impact factor: 4.033

3.  Using prior knowledge in the determination of macromolecular size-distributions by analytical ultracentrifugation.

Authors:  Patrick H Brown; Andrea Balbo; Peter Schuck
Journal:  Biomacromolecules       Date:  2007-05-24       Impact factor: 6.988

4.  A new adaptive grid-size algorithm for the simulation of sedimentation velocity profiles in analytical ultracentrifugation.

Authors:  Patrick H Brown; Peter Schuck
Journal:  Comput Phys Commun       Date:  2008-01-15       Impact factor: 4.390

5.  Enhanced resolution of sedimentation coefficient distribution profiles by extrapolation to infinite time.

Authors:  Joachim Behlke; Otto Ristau
Journal:  Eur Biophys J       Date:  2009-03-06       Impact factor: 1.733

6.  Using modern approaches to sedimentation velocity to detect conformational changes in proteins.

Authors:  Chad A Brautigam; Shih-Chia Tso; Ranjit K Deka; Wei Z Liu; Michael V Norgard
Journal:  Eur Biophys J       Date:  2020-08-05       Impact factor: 1.733

Review 7.  Allowance for boundary sharpening in the determination of diffusion coefficients by sedimentation velocity: a historical perspective.

Authors:  Donald J Winzor; David J Scott
Journal:  Biophys Rev       Date:  2018-01-27

8.  Tetrameric oligomerization of IkappaB kinase gamma (IKKgamma) is obligatory for IKK complex activity and NF-kappaB activation.

Authors:  Sebastian Tegethoff; Joachim Behlke; Claus Scheidereit
Journal:  Mol Cell Biol       Date:  2003-03       Impact factor: 4.272

9.  On the analysis of sedimentation velocity in the study of protein complexes.

Authors:  Patrick H Brown; Andrea Balbo; Peter Schuck
Journal:  Eur Biophys J       Date:  2009-07-31       Impact factor: 1.733

10.  The ABRF-MIRG'02 study: assembly state, thermodynamic, and kinetic analysis of an enzyme/inhibitor interaction.

Authors:  D G Myszka; Y N Abdiche; F Arisaka; O Byron; E Eisenstein; P Hensley; J A Thomson; C R Lombardo; F Schwarz; W Stafford; M L Doyle
Journal:  J Biomol Tech       Date:  2003-12
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