Literature DB >> 11863462

Chemical rescue in catalysis by human carbonic anhydrases II and III.

Haiqian An1, Chingkuang Tu, David Duda, Ileana Montanez-Clemente, Kristen Math, Philip J Laipis, Robert McKenna, David N Silverman.   

Abstract

The maximal velocity of catalysis of CO(2) hydration by human carbonic anhydrase II (HCA II) requires proton transfer from zinc-bound water to solution assisted by His 64. The catalytic activity of a site-specific mutant of HCA II in which His 64 is replaced with Ala (H64A HCA II) can be rescued by exogenous proton donors/acceptors, usually derivatives of imidazole and pyridine. X-ray crystallography has identified Trp 5 as a binding site of the rescue agent 4-methylimidazole (4-MI) on H64A HCA II. This binding site overlaps with the "out" position in which His 64 in wild-type HCA II points away from the zinc. Activation by 4-MI as proton donor/acceptor in catalysis was determined in the dehydration direction using (18)O exchange between CO(2) and water and in the hydration direction by stopped-flow spectrophotometry. Replacement of Trp 5 by Ala, Leu, or Phe in H64A HCA II had no significant effect on enhancement by 4-MI of maximal rate constants for proton transfer in catalysis to levels near 10(5) s(-1). This high activity for chemical rescue indicates that the binding site of 4-MI at Trp 5 in H64A HCA II appears to be a nonproductive binding site, although it is possible that a similarly effective pathway for proton transfer exists in the mutants lacking Trp 5. Moreover, the data suggest that the out position of His 64 considered alone is not active in proton transfer in HCA II. In contrast to isozyme II, the replacement of Trp 5 by Ala in HCA III abolished chemical rescue of k(cat) by imidazole but left k(cat)/K(m) for hydration unchanged. This demonstrates that Trp 5 contributes to the predominant productive binding site for imidazole, with a maximal level for the rate constant of proton transfer near 10(4) s(-1). This difference in the susceptibility of CA II and III to chemical rescue may be related to the more sterically constrained and electrostatically positive nature of the active site cavity of CA III compared with CA II. The possibility of nonproductive binding sites for exogenous proton donors offers an explanation for the unusually low value of the intrinsic kinetic barrier obtained by application of Marcus theory to chemical rescue of H64A HCA II.

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Year:  2002        PMID: 11863462     DOI: 10.1021/bi0120695

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  24 in total

1.  Intramolecular proton shuttle supports not only catalytic but also noncatalytic function of carbonic anhydrase II.

Authors:  Holger M Becker; Michael Klier; Christina Schüler; Robert McKenna; Joachim W Deitmer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-31       Impact factor: 11.205

Review 2.  Voltage-gated proton channels: molecular biology, physiology, and pathophysiology of the H(V) family.

Authors:  Thomas E DeCoursey
Journal:  Physiol Rev       Date:  2013-04       Impact factor: 37.312

3.  Characterization of CamH from Methanosarcina thermophila, founding member of a subclass of the {gamma} class of carbonic anhydrases.

Authors:  Sabrina A Zimmerman; Jean-Francois Tomb; James G Ferry
Journal:  J Bacteriol       Date:  2009-12-18       Impact factor: 3.490

4.  Intrinsic proton-donating power of zinc-bound water in a carbonic anhydrase active site model estimated by NMR.

Authors:  Stepan B Lesnichin; Ilya G Shenderovich; Titin Muljati; David Silverman; Hans-Heinrich Limbach
Journal:  J Am Chem Soc       Date:  2011-07-01       Impact factor: 15.419

5.  Chemical rescue of enzymes: proton transfer in mutants of human carbonic anhydrase II.

Authors:  C Mark Maupin; Norberto Castillo; Srabani Taraphder; Chingkuang Tu; Robert McKenna; David N Silverman; Gregory A Voth
Journal:  J Am Chem Soc       Date:  2011-03-31       Impact factor: 15.419

6.  Location of binding sites in small molecule rescue of human carbonic anhydrase II.

Authors:  Deepa Bhatt; S Zoë Fisher; Chingkuang Tu; Robert McKenna; David N Silverman
Journal:  Biophys J       Date:  2006-10-27       Impact factor: 4.033

7.  Water networks in fast proton transfer during catalysis by human carbonic anhydrase II.

Authors:  Rose Mikulski; Dayne West; Katherine H Sippel; Balendu Sankara Avvaru; Mayank Aggarwal; Chingkuang Tu; Robert McKenna; David N Silverman
Journal:  Biochemistry       Date:  2012-12-18       Impact factor: 3.162

8.  Effect of active-site mutation at Asn67 on the proton transfer mechanism of human carbonic anhydrase II.

Authors:  C Mark Maupin; Jiayin Zheng; Chingkuang Tu; Robert McKenna; David N Silverman; Gregory A Voth
Journal:  Biochemistry       Date:  2009-08-25       Impact factor: 3.162

9.  Elucidation of the proton transport mechanism in human carbonic anhydrase II.

Authors:  C Mark Maupin; Robert McKenna; David N Silverman; Gregory A Voth
Journal:  J Am Chem Soc       Date:  2009-06-10       Impact factor: 15.419

10.  Role of hydrophilic residues in proton transfer during catalysis by human carbonic anhydrase II.

Authors:  Jiayin Zheng; Balendu Sankara Avvaru; Chingkuang Tu; Robert McKenna; David N Silverman
Journal:  Biochemistry       Date:  2008-10-23       Impact factor: 3.162

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