Literature DB >> 15738426

Interprotein electron transfer from cytochrome c2 to photosynthetic reaction center: tunneling across an aqueous interface.

Osamu Miyashita1, Melvin Y Okamura, José N Onuchic.   

Abstract

Interprotein electron transfer (ET) reactions play an important role in biological energy conversion processes. One of these reactions, the ET between cytochrome c(2) (cyt) and reaction center from photosynthetic bacteria, is the focus of this theoretical study. The changes in the ET rate constant at fixed distances during the association process were calculated as the cyt moved from the electrostatically stabilized encounter complex to the bound state having short range van der Waals contacts in the tunneling region. Multiple conformations of the protein were generated by molecular dynamics simulations including explicit water molecules. For each of these conformations, the ET rate was calculated by using the Pathways model. The ET rate increased smoothly as the cyt approached from the encounter complex to the bound state, with a tunneling decay factor beta = 1.1 A(-1). This relatively efficient coupling between redox centers is due to the ability of interfacial water molecules to form multiple strong hydrogen bonding pathways connecting tunneling pathways on the surfaces of the two proteins. The ET rate determined for the encounter complex ensemble of states is only about a factor of 100 slower than that of the bound state (tau = 100 micros, compared with 1 micros), because of fluctuations of the cyt within the encounter complex ensemble through configurations having strong tunneling pathways. The ET rate for the encounter complex is in agreement with rates observed in mutant reaction centers modified to remove shortrange hydrophobic interactions, suggesting that in this case, ET occurs within the solvent-separated, electrostatically stabilized encounter complex.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 15738426      PMCID: PMC553326          DOI: 10.1073/pnas.0409600102

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

Review 1.  Electron tunneling through proteins.

Authors:  Harry B Gray; Jay R Winkler
Journal:  Q Rev Biophys       Date:  2003-08       Impact factor: 5.318

2.  Transition state and encounter complex for fast association of cytochrome c2 with bacterial reaction center.

Authors:  Osamu Miyashita; José N Onuchic; Melvin Y Okamura
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-01       Impact factor: 11.205

3.  Protein electron transfer rates set by the bridging secondary and tertiary structure.

Authors:  D N Beratan; J N Betts; J N Onuchic
Journal:  Science       Date:  1991-05-31       Impact factor: 47.728

Review 4.  Electron transfer in proteins.

Authors:  H B Gray; J R Winkler
Journal:  Annu Rev Biochem       Date:  1996       Impact factor: 23.643

5.  Effect of protein dynamics on biological electron transfer.

Authors:  I Daizadeh; E S Medvedev; A A Stuchebrukhov
Journal:  Proc Natl Acad Sci U S A       Date:  1997-04-15       Impact factor: 11.205

6.  Targeted molecular dynamics: a new approach for searching pathways of conformational transitions.

Authors:  J Schlitter; M Engels; P Krüger
Journal:  J Mol Graph       Date:  1994-06

7.  Electron tunneling in protein crystals.

Authors:  F A Tezcan; B R Crane; J R Winkler; H B Gray
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-10       Impact factor: 11.205

8.  Tyrosine 162 of the photosynthetic reaction center L-subunit plays a critical role in the cytochrome c2 mediated rereduction of the photooxidized bacteriochlorophyll dimer in Rhodobacter sphaeroides. 1. Site-directed mutagenesis and initial characterization.

Authors:  J W Farchaus; J Wachtveitl; P Mathis; D Oesterhelt
Journal:  Biochemistry       Date:  1993-10-12       Impact factor: 3.162

9.  Dynamic docking and electron transfer between Zn-myoglobin and cytochrome b(5).

Authors:  Zhao-Xun Liang; Judith M Nocek; Kai Huang; Ryan T Hayes; Igor V Kurnikov; David N Beratan; Brian M Hoffman
Journal:  J Am Chem Soc       Date:  2002-06-19       Impact factor: 15.419

10.  X-ray structure determination of the cytochrome c2: reaction center electron transfer complex from Rhodobacter sphaeroides.

Authors:  Herbert L Axelrod; Edward C Abresch; Melvin Y Okamura; Andrew P Yeh; Douglas C Rees; George Feher
Journal:  J Mol Biol       Date:  2002-05-31       Impact factor: 5.469

View more
  34 in total

1.  Electron transfer in subunit NuoI (TYKY) of Escherichia coli NADH:quinone oxidoreductase (NDH-1).

Authors:  Prem Kumar Sinha; Eiko Nakamaru-Ogiso; Jesus Torres-Bacete; Motoaki Sato; Norma Castro-Guerrero; Tomoko Ohnishi; Akemi Matsuno-Yagi; Takao Yagi
Journal:  J Biol Chem       Date:  2012-04-02       Impact factor: 5.157

2.  Surface residues dynamically organize water bridges to enhance electron transfer between proteins.

Authors:  Aurélien de la Lande; Nathan S Babcock; Jan Rezác; Barry C Sanders; Dennis R Salahub
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-14       Impact factor: 11.205

3.  Electron tunneling in respiratory complex I.

Authors:  Tomoyuki Hayashi; Alexei A Stuchebrukhov
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-25       Impact factor: 11.205

4.  Long-range electron transfer.

Authors:  Harry B Gray; Jay R Winkler
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-28       Impact factor: 11.205

5.  Distant charge transport.

Authors:  Harry B Gray; Jack Halpern
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-28       Impact factor: 11.205

6.  Long-range protein electron transfer observed at the single-molecule level: In situ mapping of redox-gated tunneling resonance.

Authors:  Qijin Chi; Ole Farver; Jens Ulstrup
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-31       Impact factor: 11.205

7.  The nature of aqueous tunneling pathways between electron-transfer proteins.

Authors:  Jianping Lin; Ilya A Balabin; David N Beratan
Journal:  Science       Date:  2005-11-25       Impact factor: 47.728

8.  Quantum electron tunneling in respiratory complex I.

Authors:  Tomoyuki Hayashi; Alexei A Stuchebrukhov
Journal:  J Phys Chem B       Date:  2011-04-15       Impact factor: 2.991

Review 9.  Structures of proteins and cofactors: X-ray crystallography.

Authors:  J P Allen; C Seng; C Larson
Journal:  Photosynth Res       Date:  2009 Nov-Dec       Impact factor: 3.573

10.  Experimental evidence for water mediated electron transfer through bis-amino acid donor-bridge-acceptor oligomers.

Authors:  Subhasis Chakrabarti; Matthew F L Parker; Christopher W Morgan; Christian E Schafmeister; David H Waldeck
Journal:  J Am Chem Soc       Date:  2009-02-18       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.