Literature DB >> 11839489

Protein folding and three-dimensional domain swapping: a strained relationship?

Marcia E Newcomer1.   

Abstract

Many proteins function as multimeric assemblies into which the folded individual promoters organize as higher order structures. An oligomerization mechanism that appears to impose the coordination of events during folding and oligomer assembly is three-dimensional domain swapping. Recent studies have focused on revealing the structural basis of domain swapping and a possible role for domain swapping in the regulation of protein aggregation and activity.

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Year:  2002        PMID: 11839489     DOI: 10.1016/s0959-440x(02)00288-9

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  33 in total

1.  Molecular mechanism of domain swapping in proteins: an analysis of slower motions.

Authors:  Sibsankar Kundu; Robert L Jernigan
Journal:  Biophys J       Date:  2004-06       Impact factor: 4.033

2.  E. coli trp repressor forms a domain-swapped array in aqueous alcohol.

Authors:  Catherine L Lawson; Brian Benoff; Tatyana Berger; Helen M Berman; Jannette Carey
Journal:  Structure       Date:  2004-06       Impact factor: 5.006

3.  Domain swapping is a consequence of minimal frustration.

Authors:  Sichun Yang; Samuel S Cho; Yaakov Levy; Margaret S Cheung; Herbert Levine; Peter G Wolynes; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2004-09-10       Impact factor: 11.205

4.  The impact of solubility and electrostatics on fibril formation by the H3 and H4 histones.

Authors:  Traci B Topping; Lisa M Gloss
Journal:  Protein Sci       Date:  2011-11-09       Impact factor: 6.725

Review 5.  The Landscape of Intertwined Associations in Homooligomeric Proteins.

Authors:  Shoshana J Wodak; Anatoly Malevanets; Stephen S MacKinnon
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

6.  Open interface and large quaternary structure movements in 3D domain swapped proteins: insights from molecular dynamics simulations of the C-terminal swapped dimer of ribonuclease A.

Authors:  Antonello Merlino; Marc Antoine Ceruso; Luigi Vitagliano; Lelio Mazzarella
Journal:  Biophys J       Date:  2004-12-13       Impact factor: 4.033

Review 7.  Process of protein transport by the type III secretion system.

Authors:  Partho Ghosh
Journal:  Microbiol Mol Biol Rev       Date:  2004-12       Impact factor: 11.056

Review 8.  Protein reconstitution and three-dimensional domain swapping: benefits and constraints of covalency.

Authors:  Jannette Carey; Stina Lindman; Mikael Bauer; Sara Linse
Journal:  Protein Sci       Date:  2007-11       Impact factor: 6.725

9.  Two independently folding units of Plasmodium profilin suggest evolution via gene fusion.

Authors:  Saligram Prabhakar Bhargav; Juha Vahokoski; Juha Pekka Kallio; Andrew E Torda; Petri Kursula; Inari Kursula
Journal:  Cell Mol Life Sci       Date:  2015-05-27       Impact factor: 9.261

10.  Insights into Protein Sequence and Structure-Derived Features Mediating 3D Domain Swapping Mechanism using Support Vector Machine Based Approach.

Authors:  Khader Shameer; Ganesan Pugalenthi; Krishna Kumar Kandaswamy; Ponnuthurai N Suganthan; Govindaraju Archunan; Ramanathan Sowdhamini
Journal:  Bioinform Biol Insights       Date:  2010-06-17
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