Literature DB >> 15274929

E. coli trp repressor forms a domain-swapped array in aqueous alcohol.

Catherine L Lawson1, Brian Benoff, Tatyana Berger, Helen M Berman, Jannette Carey.   

Abstract

The E. coli trp repressor (trpR) homodimer recognizes its palindromic DNA binding site through a pair of flexible helix-turn-helix (HTH) motifs displayed on an intertwined helical core. Flexible N-terminal arms mediate association between dimers bound to tandem DNA sites. The 2.5 A X-ray structure of trpR crystallized in 30% (v/v) isopropanol reveals a substantial conformational rearrangement of HTH motifs and N-terminal arms, with the protein appearing in the unusual form of an ordered 3D domain-swapped supramolecular array. Small angle X-ray scattering measurements show that the self-association properties of trpR in solution are fundamentally altered by isopropanol.

Entities:  

Mesh:

Substances:

Year:  2004        PMID: 15274929      PMCID: PMC3228604          DOI: 10.1016/j.str.2004.03.019

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  48 in total

1.  Cooperative folding units of escherichia coli tryptophan repressor.

Authors:  A Wallqvist; T A Lavoie; J A Chanatry; D G Covell; J Carey
Journal:  Biophys J       Date:  1999-09       Impact factor: 4.033

2.  Crystal structure of the helicase domain from the replicative helicase-primase of bacteriophage T7.

Authors:  M R Sawaya; S Guo; S Tabor; C C Richardson; T Ellenberger
Journal:  Cell       Date:  1999-10-15       Impact factor: 41.582

3.  SFCHECK: a unified set of procedures for evaluating the quality of macromolecular structure-factor data and their agreement with the atomic model.

Authors:  A A Vaguine; J Richelle; S J Wodak
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-01-01

4.  Crystal structure of the "cab"-type beta class carbonic anhydrase from the archaeon Methanobacterium thermoautotrophicum.

Authors:  P Strop; K S Smith; T M Iverson; J G Ferry; D C Rees
Journal:  J Biol Chem       Date:  2000-11-28       Impact factor: 5.157

5.  Crystal structure of cyanovirin-N, a potent HIV-inactivating protein, shows unexpected domain swapping.

Authors:  F Yang; C A Bewley; J M Louis; K R Gustafson; M R Boyd; A M Gronenborn; G M Clore; A Wlodawer
Journal:  J Mol Biol       Date:  1999-05-07       Impact factor: 5.469

6.  Locating interaction sites on proteins: the crystal structure of thermolysin soaked in 2% to 100% isopropanol.

Authors:  A C English; S H Done; L S Caves; C R Groom; R E Hubbard
Journal:  Proteins       Date:  1999-12-01

Review 7.  Trifluoroethanol and colleagues: cosolvents come of age. Recent studies with peptides and proteins.

Authors:  M Buck
Journal:  Q Rev Biophys       Date:  1998-08       Impact factor: 5.318

8.  The active conformation of plasminogen activator inhibitor 1, a target for drugs to control fibrinolysis and cell adhesion.

Authors:  A M Sharp; P E Stein; N S Pannu; R W Carrell; M B Berkenpas; D Ginsburg; D A Lawrence; R J Read
Journal:  Structure       Date:  1999-02-15       Impact factor: 5.006

9.  Use of TLS parameters to model anisotropic displacements in macromolecular refinement.

Authors:  M D Winn; M N Isupov; G N Murshudov
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2001-01

10.  Oligomerization of the EK18 mutant of the trp repressor of Escherichia coli as observed by NMR spectroscopy.

Authors:  Y K Chae; F Abildgaard; C A Royer; J L Markley
Journal:  Arch Biochem Biophys       Date:  1999-11-01       Impact factor: 4.013

View more
  8 in total

1.  The impact of solubility and electrostatics on fibril formation by the H3 and H4 histones.

Authors:  Traci B Topping; Lisa M Gloss
Journal:  Protein Sci       Date:  2011-11-09       Impact factor: 6.725

Review 2.  Protein reconstitution and three-dimensional domain swapping: benefits and constraints of covalency.

Authors:  Jannette Carey; Stina Lindman; Mikael Bauer; Sara Linse
Journal:  Protein Sci       Date:  2007-11       Impact factor: 6.725

3.  Environment-dependent long-range structural distortion in a temperature-sensitive point mutant.

Authors:  Jannette Carey; Brian Benoff; Balasubramanian Harish; Lara Yuan; Catherine L Lawson
Journal:  Protein Sci       Date:  2011-12-08       Impact factor: 6.725

Review 4.  RNA-based regulation of genes of tryptophan synthesis and degradation, in bacteria.

Authors:  Charles Yanofsky
Journal:  RNA       Date:  2007-06-29       Impact factor: 4.942

5.  A five-residue motif for the design of domain swapping in proteins.

Authors:  Neha Nandwani; Parag Surana; Hitendra Negi; Nahren M Mascarenhas; Jayant B Udgaonkar; Ranabir Das; Shachi Gosavi
Journal:  Nat Commun       Date:  2019-01-28       Impact factor: 14.919

6.  Crystal structures of Val58Ile tryptophan repressor in a domain-swapped array in the presence and absence of L-tryptophan.

Authors:  Janina Sprenger; Catherine L Lawson; Claes von Wachenfeldt; Leila Lo Leggio; Jannette Carey
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2021-07-30       Impact factor: 1.056

7.  Mapping the conformational space accessible to catechol-O-methyltransferase.

Authors:  Andreas Ehler; Jörg Benz; Daniel Schlatter; Markus G Rudolph
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2014-07-25

8.  Benefits and constrains of covalency: the role of loop length in protein stability and ligand binding.

Authors:  Sara Linse; Eva Thulin; Hanna Nilsson; Johannes Stigler
Journal:  Sci Rep       Date:  2020-11-18       Impact factor: 4.379

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.