Literature DB >> 11806943

Hydration effects of heparin on antithrombin probed by osmotic stress.

Maria P McGee1, Jie Liang, James Luba.   

Abstract

Antithrombin is a key inhibitor of blood coagulation proteases and a prototype metastable protein. Heparin binding to antithrombin induces conformational transitions distal to the binding site. We applied osmotic stress techniques and rate measurements in the stopped flow fluorometer to investigate the possibility that hydration changes are associated with these transitions. Water transfer was identified from changes in the free energy of activation, Delta G(++), with osmotic pressure pi. The Delta G(++) was determined from the rate of fluorescence enhancement/decrease associated with heparin binding/release. The volume of water transferred, Delta V, was determined from the relationship, Delta G/pi = Delta V. With an osmotic probe of 4 A radius, the volumes transferred correspond to 158 +/- 11 water molecules from reactants to bulk during association and 162 +/- 22 from bulk to reactants during dissociation. Analytical characterization of water-permeable volumes in x-ray-derived bound and free antithrombin structures were correlated with the volumes measured in solution. Volume changes in water permeable pockets were identified at the loop-insertion and heparin-binding regions. Analyses of the pockets' atomic composition indicate that residues Ser-79, Ala-86, Val-214, Leu-215, Asn-217, Ile-219, and Thr-218 contribute atoms to both the heparin-binding pockets and to the loop-insertion region. These results demonstrate that the increases and decreases in the intrinsic fluorescence of antithrombin during heparin binding and release are linked to dehydration and hydration reactions, respectively. Together with the structural analyses, results also suggest a direct mechanism linking heparin binding/release to loop expulsion/insertion.

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Year:  2002        PMID: 11806943      PMCID: PMC1301910          DOI: 10.1016/S0006-3495(02)75463-5

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  38 in total

1.  Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives.

Authors:  V A Parsegian; R P Rand; D C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  Anatomy of protein pockets and cavities: measurement of binding site geometry and implications for ligand design.

Authors:  J Liang; H Edelsbrunner; C Woodward
Journal:  Protein Sci       Date:  1998-09       Impact factor: 6.725

3.  Characterization of a human alpha1-antitrypsin variant that is as stable as ovalbumin.

Authors:  K N Lee; H Im; S W Kang; M H Yu
Journal:  J Biol Chem       Date:  1998-01-30       Impact factor: 5.157

4.  Structural insights into serpin-protease complexes reveal the inhibitory mechanism of serpins.

Authors:  M Wilczynska; M Fa; J Karolin; P I Ohlsson; L B Johansson; T Ny
Journal:  Nat Struct Biol       Date:  1997-05

5.  Transient kinetics of heparin-catalyzed protease inactivation by antithrombin III. Characterization of assembly, product formation, and heparin dissociation steps in the factor Xa reaction.

Authors:  P A Craig; S T Olson; J D Shore
Journal:  J Biol Chem       Date:  1989-04-05       Impact factor: 5.157

6.  On the size of the active site in proteases. I. Papain.

Authors:  I Schechter; A Berger
Journal:  Biochem Biophys Res Commun       Date:  1967-04-20       Impact factor: 3.575

7.  The 2.6 A structure of antithrombin indicates a conformational change at the heparin binding site.

Authors:  R Skinner; J P Abrahams; J C Whisstock; A M Lesk; R W Carrell; M R Wardell
Journal:  J Mol Biol       Date:  1997-02-28       Impact factor: 5.469

8.  Deconvolution of the fluorescence emission spectrum of human antithrombin and identification of the tryptophan residues that are responsive to heparin binding.

Authors:  J L Meagher; J M Beechem; S T Olson; P G Gettins
Journal:  J Biol Chem       Date:  1998-09-04       Impact factor: 5.157

9.  Inhibitory mechanism of serpins: loop insertion forces acylation of plasminogen activator by plasminogen activator inhibitor-1.

Authors:  J O Kvassman; I Verhamme; J D Shore
Journal:  Biochemistry       Date:  1998-11-03       Impact factor: 3.162

10.  Antithrombins Wibble and Wobble (T85M/K): archetypal conformational diseases with in vivo latent-transition, thrombosis, and heparin activation.

Authors:  N J Beauchamp; R N Pike; M Daly; L Butler; M Makris; T R Dafforn; A Zhou; H L Fitton; F E Preston; I R Peake; R W Carrell
Journal:  Blood       Date:  1998-10-15       Impact factor: 22.113

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