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Literature DB >> 11805309

Deciphering genetic regulatory codes: a challenge for functional genomics.

Alan M Michelson¹.

Abstract

Mesh：

Substances：
Transcription Factors

Year: 2002 PMID： 11805309 PMCID： PMC117339 DOI： 10.1073/pnas.032685999

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

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31 in total

1. Systematic determination of genetic network architecture.

Authors: S Tavazoie; J D Hughes; M J Campbell; R J Cho; G M Church
Journal: Nat Genet Date: 1999-07 Impact factor: 38.330

2. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae.

Authors: J D Hughes; P W Estep; S Tavazoie; G M Church
Journal: J Mol Biol Date: 2000-03-10 Impact factor: 5.469

Review 3. DNA binding sites: representation and discovery.

Authors: G D Stormo
Journal: Bioinformatics Date: 2000-01 Impact factor: 6.937

Review 4. Discovery and modeling of transcriptional regulatory regions.

Authors: J W Fickett; W W Wasserman
Journal: Curr Opin Biotechnol Date: 2000-02 Impact factor: 9.740

Review 5. Going the distance: a current view of enhancer action.

Authors: E M Blackwood; J T Kadonaga
Journal: Science Date: 1998-07-03 Impact factor: 47.728

6. Genomic cis-regulatory logic: experimental and computational analysis of a sea urchin gene.

Authors: C H Yuh; H Bolouri; E H Davidson
Journal: Science Date: 1998-03-20 Impact factor: 47.728

7. Identification of regulatory regions which confer muscle-specific gene expression.

Authors: W W Wasserman; J W Fickett
Journal: J Mol Biol Date: 1998-04-24 Impact factor: 5.469

8. A novel method to develop highly specific models for regulatory units detects a new LTR in GenBank which contains a functional promoter.

Authors: K Frech; J Danescu-Mayer; T Werner
Journal: J Mol Biol Date: 1997-08-01 Impact factor: 5.469

9. Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation.

Authors: F P Roth; J D Hughes; P W Estep; G M Church
Journal: Nat Biotechnol Date: 1998-10 Impact factor: 54.908

10. The genome sequence of Drosophila melanogaster.

Authors: M D Adams; S E Celniker; R A Holt; C A Evans; J D Gocayne; P G Amanatides; S E Scherer; P W Li; R A Hoskins; R F Galle; R A George; S E Lewis; S Richards; M Ashburner; S N Henderson; G G Sutton; J R Wortman; M D Yandell; Q Zhang; L X Chen; R C Brandon; Y H Rogers; R G Blazej; M Champe; B D Pfeiffer; K H Wan; C Doyle; E G Baxter; G Helt; C R Nelson; G L Gabor; J F Abril; A Agbayani; H J An; C Andrews-Pfannkoch; D Baldwin; R M Ballew; A Basu; J Baxendale; L Bayraktaroglu; E M Beasley; K Y Beeson; P V Benos; B P Berman; D Bhandari; S Bolshakov; D Borkova; M R Botchan; J Bouck; P Brokstein; P Brottier; K C Burtis; D A Busam; H Butler; E Cadieu; A Center; I Chandra; J M Cherry; S Cawley; C Dahlke; L B Davenport; P Davies; B de Pablos; A Delcher; Z Deng; A D Mays; I Dew; S M Dietz; K Dodson; L E Doup; M Downes; S Dugan-Rocha; B C Dunkov; P Dunn; K J Durbin; C C Evangelista; C Ferraz; S Ferriera; W Fleischmann; C Fosler; A E Gabrielian; N S Garg; W M Gelbart; K Glasser; A Glodek; F Gong; J H Gorrell; Z Gu; P Guan; M Harris; N L Harris; D Harvey; T J Heiman; J R Hernandez; J Houck; D Hostin; K A Houston; T J Howland; M H Wei; C Ibegwam; M Jalali; F Kalush; G H Karpen; Z Ke; J A Kennison; K A Ketchum; B E Kimmel; C D Kodira; C Kraft; S Kravitz; D Kulp; Z Lai; P Lasko; Y Lei; A A Levitsky; J Li; Z Li; Y Liang; X Lin; X Liu; B Mattei; T C McIntosh; M P McLeod; D McPherson; G Merkulov; N V Milshina; C Mobarry; J Morris; A Moshrefi; S M Mount; M Moy; B Murphy; L Murphy; D M Muzny; D L Nelson; D R Nelson; K A Nelson; K Nixon; D R Nusskern; J M Pacleb; M Palazzolo; G S Pittman; S Pan; J Pollard; V Puri; M G Reese; K Reinert; K Remington; R D Saunders; F Scheeler; H Shen; B C Shue; I Sidén-Kiamos; M Simpson; M P Skupski; T Smith; E Spier; A C Spradling; M Stapleton; R Strong; E Sun; R Svirskas; C Tector; R Turner; E Venter; A H Wang; X Wang; Z Y Wang; D A Wassarman; G M Weinstock; J Weissenbach; S M Williams; K C Worley; D Wu; S Yang; Q A Yao; J Ye; R F Yeh; J S Zaveri; M Zhan; G Zhang; Q Zhao; L Zheng; X H Zheng; F N Zhong; W Zhong; X Zhou; S Zhu; X Zhu; H O Smith; R A Gibbs; E W Myers; G M Rubin; J C Venter
Journal: Science Date: 2000-03-24 Impact factor: 47.728

27 in total

Review 1. In silico identification of metazoan transcriptional regulatory regions.

Authors: Wyeth W Wasserman; William Krivan
Journal: Naturwissenschaften Date: 2003-03-27

2. Detection and visualization of compositionally similar cis-regulatory element clusters in orthologous and coordinately controlled genes.

Authors: Anil G Jegga; Shawn P Sherwood; James W Carman; Andrew T Pinski; Jerry L Phillips; John P Pestian; Bruce J Aronow
Journal: Genome Res Date: 2002-09 Impact factor: 9.043

3. Extracting functional information from microarrays: a challenge for functional genomics.

Authors: Michael Q Zhang
Journal: Proc Natl Acad Sci U S A Date: 2002-09-23 Impact factor: 11.205

4. Kinetic profiles of p300 occupancy in vivo predict common features of promoter structure and coactivator recruitment.

Authors: James L Smith; Wendy J Freebern; Irene Collins; Adriana De Siervi; Idalia Montano; Cynthia M Haggerty; Markey C McNutt; Wayne G Butscher; Inna Dzekunova; David W Petersen; Ernest Kawasaki; Juanita L Merchant; Kevin Gardner
Journal: Proc Natl Acad Sci U S A Date: 2004-07-30 Impact factor: 11.205