Literature DB >> 11788729

Genetic screening using the colour change of a PNA-DNA hybrid-binding cyanine dye.

L Marcus Wilhelmsson1, Bengt Nordén, Kaushik Mukherjee, Maria T Dulay, Richard N Zare.   

Abstract

As the relationship between human genes and various malfunctions and diseases becomes revealed at an ever-increasing pace, the need arises for the development of rapid genetic screening methods for diagnostic purposes. Genetic diseases show great diversity. Some are caused by a few characteristic localised mutations, while others arise from a large number of variations. Hence, it is unlikely that a single, general diagnostic method that applies to all cases will ever exist. Instead, a combination of methods is frequently applied. Here we propose the use of a dramatic colour change that a cyanine dye, 3,3'-diethylthiadicarbocyanine, displays upon binding to DNA-PNA duplexes. This method could become an inexpensive, fast and simple genetic screening test by visual inspection, with no need for complicated equipment. Our results demonstrate that this diagnostic method may be sufficiently sensitive to discriminate between even a fully complementary and a single mutation DNA sequence.

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Year:  2002        PMID: 11788729      PMCID: PMC99842          DOI: 10.1093/nar/30.2.e3

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  9 in total

1.  Screening for genetic mutations.

Authors:  C Carlsson; M Jonsson; B Nordén; M T Dulay; R N Zare; J Noolandi; P E Nielsen; L C Tsui; J Zielenski
Journal:  Nature       Date:  1996-03-21       Impact factor: 49.962

2.  Identification of the cystic fibrosis gene: genetic analysis.

Authors:  B Kerem; J M Rommens; J A Buchanan; D Markiewicz; T K Cox; A Chakravarti; M Buchwald; L C Tsui
Journal:  Science       Date:  1989-09-08       Impact factor: 47.728

3.  Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms.

Authors:  M Orita; H Iwahana; H Kanazawa; K Hayashi; T Sekiya
Journal:  Proc Natl Acad Sci U S A       Date:  1989-04       Impact factor: 11.205

4.  Comprehensive mutation screening in a cystic fibrosis center.

Authors:  J J Wine; E Kuo; G Hurlock; R B Moss
Journal:  Pediatrics       Date:  2001-02       Impact factor: 7.124

5.  Analysis of any point mutation in DNA. The amplification refractory mutation system (ARMS).

Authors:  C R Newton; A Graham; L E Heptinstall; S J Powell; C Summers; N Kalsheker; J C Smith; A F Markham
Journal:  Nucleic Acids Res       Date:  1989-04-11       Impact factor: 16.971

6.  A ligase-mediated gene detection technique.

Authors:  U Landegren; R Kaiser; J Sanders; L Hood
Journal:  Science       Date:  1988-08-26       Impact factor: 47.728

7.  High throughput parallel analysis of hundreds of patient samples for more than 100 mutations in multiple disease genes.

Authors:  A P Shuber; L A Michalowsky; G S Nass; J Skoletsky; L M Hire; S K Kotsopoulos; M F Phipps; D M Barberio; K W Klinger
Journal:  Hum Mol Genet       Date:  1997-03       Impact factor: 6.150

8.  Spectroscopic recognition of guanine dimeric hairpin quadruplexes by a carbocyanine dye.

Authors:  Q Chen; I D Kuntz; R H Shafer
Journal:  Proc Natl Acad Sci U S A       Date:  1996-04-02       Impact factor: 11.205

9.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

  9 in total
  2 in total

1.  Evaluation of Candidate Reference Genes for Real-Time Quantitative PCR of Plant Samples Using Purified cDNA as Template.

Authors:  Michael A Phillips; John C D'Auria; Katrin Luck; Jonathan Gershenzon
Journal:  Plant Mol Biol Report       Date:  2009       Impact factor: 1.595

2.  Accelerated photobleaching of a cyanine dye in the presence of a ternary target DNA, PNA probe, dye catalytic complex: a molecular diagnostic.

Authors:  M Wang; R Holmes-Davis; Z Rafinski; B Jedrzejewska; K Y Choi; M Zwick; C Bupp; A Izmailov; J Paczkowski; B Warner; H Koshinsky
Journal:  Anal Chem       Date:  2009-03-15       Impact factor: 6.986

  2 in total

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