Literature DB >> 11782180

17O ENDOR detection of a solvent-derived Ni-(OH(x))-Fe bridge that is lost upon activation of the hydrogenase from Desulfovibrio gigas.

Marta Carepo1, David L Tierney, Carlos D Brondino, Tran Chin Yang, Ana Pamplona, Joshua Telser, Isabel Moura, José J G Moura, Brian M Hoffman.   

Abstract

Crystallographic studies of the hydrogenases (Hases) from Desulfovibrio gigas (Dg) and Desulfovibrio vulgaris Miyazaki (DvM) have revealed heterodinuclear nickel-iron active centers in both enzymes. The structures, which represent the as-isolated (unready) Ni-A (S = (1)/(2)) enzyme state, disclose a nonprotein ligand (labeled as X) bridging the two metals. The bridging atom was suggested to be an oxygenic (O(2)(-) or OH(-)) species in Dg Hase and an inorganic sulfide in DvM Hase. To determine the nature and chemical characteristics of the Ni-X-Fe bridging ligand in Dg Hase, we have performed 35 GHz CW (17)O ENDOR measurements on the Ni-A form of the enzyme, exchanged into H(2)(17)O, on the active Ni-C (S = (1)/(2)) form prepared by H(2)-reduction of Ni-A in H(2)(17)O, and also on Ni-A formed by reoxidation of Ni-C in H(2)(17)O. In the native state of the protein (Ni-A), the bridging ligand does not exchange with the H(2)(17)O solvent. However, after a reduction/reoxidation cycle (Ni-A --> Ni-C --> Ni-A), an (17)O label is introduced at the active site, as seen by ENDOR. Detailed analysis of a 2-D field-frequency plot of ENDOR spectra taken across the EPR envelope of Ni-A((17)O) shows that the incorporated (17)O has a roughly axial hyperfine tensor, A((17)O) approximately [5, 7, 20] MHz, discloses its orientation relative to the g tensor, and also yields an estimate of the quadrupole tensor. The substantial isotropic component (a(iso)((17)O) approximately 11 MHz) of the hyperfine interaction indicates that a solvent-derived (17)O is indeed a ligand to Ni and thus that the bridging ligand X in the Ni-A state of Dg Hase is indeed an oxygenic (O(2)(-) or OH(-)) species; comparison with earlier EPR results by others indicates that the same holds for Ni-B. The small (57)Fe hyperfine coupling seen previously for Ni-A (A((57)Fe) approximately 0.9 MHz) is now shown to persist in Ni-C, A((57)Fe) approximately 0.8 MHz. However, the (17)O signal is lost upon reductive activation to the Ni-C state; reoxidation to Ni-A leads to the reappearance of the signal. Consideration of the electronic structure of the EPR-active states of the dinuclear center leads us to suggest that the oxygenic bridge in Ni-A(B) is lost in Ni-C and is re-formed from solvent upon reoxidation to Ni-A. This implies that the reductive activation to Ni-C opens Ni/Fe coordination sites which may play a central role in the enzyme's activity.

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Year:  2002        PMID: 11782180     DOI: 10.1021/ja010204v

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

1.  A single-crystal ENDOR and density functional theory study of the oxidized states of the [NiFe] hydrogenase from Desulfovibrio vulgaris Miyazaki F.

Authors:  Maurice van Gastel; Matthias Stein; Marc Brecht; Olga Schröder; Friedhelm Lendzian; Robert Bittl; Hideaki Ogata; Yoshiki Higuchi; Wolfgang Lubitz
Journal:  J Biol Inorg Chem       Date:  2005-11-16       Impact factor: 3.358

2.  An orientation-selected ENDOR and HYSCORE study of the Ni-C active state of Desulfovibrio vulgaris Miyazaki F hydrogenase.

Authors:  Stefanie Foerster; Maurice van Gastel; Marc Brecht; Wolfgang Lubitz
Journal:  J Biol Inorg Chem       Date:  2004-12-21       Impact factor: 3.358

Review 3.  Enzymatic activity mastered by altering metal coordination spheres.

Authors:  Isabel Moura; Sofia R Pauleta; José J G Moura
Journal:  J Biol Inorg Chem       Date:  2008-08-22       Impact factor: 3.358

4.  Computational study of the electronic structure and magnetic properties of the Ni-C state in [NiFe] hydrogenases including the second coordination sphere.

Authors:  Mario Kampa; Wolfgang Lubitz; Maurice van Gastel; Frank Neese
Journal:  J Biol Inorg Chem       Date:  2012-10-05       Impact factor: 3.358

5.  Crystallographic studies of [NiFe]-hydrogenase mutants: towards consensus structures for the elusive unready oxidized states.

Authors:  Anne Volbeda; Lydie Martin; Elodie Barbier; Oscar Gutiérrez-Sanz; Antonio L De Lacey; Pierre-Pol Liebgott; Sébastien Dementin; Marc Rousset; Juan C Fontecilla-Camps
Journal:  J Biol Inorg Chem       Date:  2014-10-15       Impact factor: 3.358

6.  Theoretical insights into [NiFe]-hydrogenases oxidation resulting in a slowly reactivating inactive state.

Authors:  Raffaella Breglia; Manuel Antonio Ruiz-Rodriguez; Alessandro Vitriolo; Rubén Francisco Gonzàlez-Laredo; Luca De Gioia; Claudio Greco; Maurizio Bruschi
Journal:  J Biol Inorg Chem       Date:  2016-11-21       Impact factor: 3.358

7.  O2-independent formation of the inactive states of NiFe hydrogenase.

Authors:  Abbas Abou Hamdan; Bénédicte Burlat; Oscar Gutiérrez-Sanz; Pierre-Pol Liebgott; Carole Baffert; Antonio L De Lacey; Marc Rousset; Bruno Guigliarelli; Christophe Léger; Sébastien Dementin
Journal:  Nat Chem Biol       Date:  2012-11-11       Impact factor: 15.040

8.  Structural differences between the ready and unready oxidized states of [NiFe] hydrogenases.

Authors:  Anne Volbeda; Lydie Martin; Christine Cavazza; Michaël Matho; Bart W Faber; Winfried Roseboom; Simon P J Albracht; Elsa Garcin; Marc Rousset; Juan C Fontecilla-Camps
Journal:  J Biol Inorg Chem       Date:  2005-04-01       Impact factor: 3.358

9.  The activation of the [NiFe]-hydrogenase from Allochromatium vinosum. An infrared spectro-electrochemical study.

Authors:  Boris Bleijlevens; Fleur A van Broekhuizen; Antonio L De Lacey; Winfried Roseboom; Victor M Fernandez; Simon P J Albracht
Journal:  J Biol Inorg Chem       Date:  2004-07-09       Impact factor: 3.358

10.  FTIR spectroelectrochemical study of the activation and inactivation processes of [NiFe] hydrogenases: effects of solvent isotope replacement and site-directed mutagenesis.

Authors:  Antonio L De Lacey; Alejandro Pardo; Víctor M Fernández; Sebastian Dementin; Geraldine Adryanczyk-Perrier; E Claude Hatchikian; Marc Rousset
Journal:  J Biol Inorg Chem       Date:  2004-06-03       Impact factor: 3.358

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