Literature DB >> 15175937

FTIR spectroelectrochemical study of the activation and inactivation processes of [NiFe] hydrogenases: effects of solvent isotope replacement and site-directed mutagenesis.

Antonio L De Lacey1, Alejandro Pardo, Víctor M Fernández, Sebastian Dementin, Geraldine Adryanczyk-Perrier, E Claude Hatchikian, Marc Rousset.   

Abstract

The kinetics of the activation and anaerobic inactivation processes of Desulfovibrio gigas hydrogenase have been measured in D(2)O by FTIR spectroelectrochemistry. A primary kinetic solvent isotope effect was observed for the inactivation process but not for the activation step. The kinetics of these processes have been also measured after replacement of a glutamic residue placed near the active site of an analogous [NiFe] hydrogenase from Desulfovibrio fructosovorans. Its replacement by a glutamine affected greatly the kinetics of the inactivation process but only slightly the activation process. The interpretation of the experimental results is that the rate-limiting step for anaerobic inactivation is the formation from water of a micro-OH(-) bridge at the hydrogenase active site, and that Glu25 has a role in this step.

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Year:  2004        PMID: 15175937     DOI: 10.1007/s00775-004-0559-7

Source DB:  PubMed          Journal:  J Biol Inorg Chem        ISSN: 0949-8257            Impact factor:   3.358


  27 in total

Review 1.  Quantum chemical calculations of [NiFe] hydrogenase.

Authors:  Matthias Stein; Wolfgang Lubitz
Journal:  Curr Opin Chem Biol       Date:  2002-04       Impact factor: 8.822

2.  Density functional calculations for modeling the active site of nickel-iron hydrogenases. 2. Predictions for the unready and ready States and the corresponding activation processes.

Authors:  Christian Stadler; Antonio L de Lacey; Yael Montet; Anne Volbeda; Juan C Fontecilla-Camps; Jose C Conesa; Víctor M Fernández
Journal:  Inorg Chem       Date:  2002-08-26       Impact factor: 5.165

3.  Redox-linked conformational changes in proteins detected by a combination of infrared spectroscopy and protein electrochemistry. Evaluation of the technique with cytochrome c.

Authors:  D Moss; E Nabedryk; J Breton; W Mäntele
Journal:  Eur J Biochem       Date:  1990-02-14

4.  Electron paramagnetic resonance studies on the mechanism of activation and the catalytic cycle of the nickel-containing hydrogenase from Desulfovibrio gigas.

Authors:  M Teixeira; I Moura; A V Xavier; B H Huynh; D V DerVartanian; H D Peck; J LeGall; J J Moura
Journal:  J Biol Chem       Date:  1985-07-25       Impact factor: 5.157

5.  Unambiguous identification of the nickel EPR signal in 61Ni-enriched Desulfovibrio gigas hydrogenase.

Authors:  J J Moura; I Moura; B H Huynh; H J Krüger; M Teixeira; R C DuVarney; D V DerVartanian; A V Xavier; H D Peck; J LeGall
Journal:  Biochem Biophys Res Commun       Date:  1982-10-29       Impact factor: 3.575

6.  Effect of 17O2 and 13CO on EPR spectra of nickel in hydrogenase from Chromatium vinosum.

Authors:  J W van der Zwaan; J M Coremans; E C Bouwens; S P Albracht
Journal:  Biochim Biophys Acta       Date:  1990-11-15

7.  Spectroscopic and kinetic characterization of active site mutants of Desulfovibrio fructosovoransNi-Fe hydrogenase.

Authors:  Antonio L DeLacey; Victor M Fernandez; Marc Rousset; Christine Cavazza; E Claude Hatchikian
Journal:  J Biol Inorg Chem       Date:  2002-09-13       Impact factor: 3.358

8.  Characterization of the nickel-iron periplasmic hydrogenase from Desulfovibrio fructosovorans.

Authors:  C E Hatchikian; A S Traore; V M Fernandez; R Cammack
Journal:  Eur J Biochem       Date:  1990-02-14

9.  Enzyme electrokinetics: electrochemical studies of the anaerobic interconversions between active and inactive states of Allochromatium vinosum [NiFe]-hydrogenase.

Authors:  Anne K Jones; Sophie E Lamle; Harsh R Pershad; Kylie A Vincent; Simon P J Albracht; Fraser A Armstrong
Journal:  J Am Chem Soc       Date:  2003-07-16       Impact factor: 15.419

10.  [3Fe-4S] to [4Fe-4S] cluster conversion in Desulfovibrio fructosovorans [NiFe] hydrogenase by site-directed mutagenesis.

Authors:  M Rousset; Y Montet; B Guigliarelli; N Forget; M Asso; P Bertrand; J C Fontecilla-Camps; E C Hatchikian
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-29       Impact factor: 11.205

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  5 in total

1.  Residue Mutations in [Fe-Fe]-hydrogenase Impedes O(2) Binding: A QM/MM Investigation.

Authors:  Daniela Dogaru; Stefan Motiu; Valentin Gogonea
Journal:  Int J Quantum Chem       Date:  2009-10-22       Impact factor: 2.444

Review 2.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

3.  Probing intermediates in the activation cycle of [NiFe] hydrogenase by infrared spectroscopy: the Ni-SIr state and its light sensitivity.

Authors:  Maria-Eirini Pandelia; Hideaki Ogata; Leslie J Currell; Marco Flores; Wolfgang Lubitz
Journal:  J Biol Inorg Chem       Date:  2009-07-21       Impact factor: 3.358

4.  Characterization of the active site of catalytically inactive forms of [NiFe] hydrogenases by density functional theory.

Authors:  Alejandro Pardo; Antonio L De Lacey; Víctor M Fernández; Yubo Fan; Michael B Hall
Journal:  J Biol Inorg Chem       Date:  2007-04-18       Impact factor: 3.358

5.  Hydroxy-bridged resting states of a [NiFe]-hydrogenase unraveled by cryogenic vibrational spectroscopy and DFT computations.

Authors:  Giorgio Caserta; Vladimir Pelmenschikov; Christian Lorent; Armel F Tadjoung Waffo; Sagie Katz; Lars Lauterbach; Janna Schoknecht; Hongxin Wang; Yoshitaka Yoda; Kenji Tamasaku; Martin Kaupp; Peter Hildebrandt; Oliver Lenz; Stephen P Cramer; Ingo Zebger
Journal:  Chem Sci       Date:  2020-12-11       Impact factor: 9.825

  5 in total

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