Literature DB >> 11778048

Combined functional genomic maps of the C. elegans DNA damage response.

Simon J Boulton1, Anton Gartner, Jérôme Reboul, Philippe Vaglio, Nick Dyson, David E Hill, Marc Vidal.   

Abstract

Many human cancers originate from defects in the DNA damage response (DDR). Although much is known about this process, it is likely that additional DDR genes remain to be discovered. To identify such genes, we used a strategy that combines protein-protein interaction mapping and large-scale phenotypic analysis in Caenorhabditis elegans. Together, these approaches identified 12 worm DDR orthologs and 11 novel DDR genes. One of these is the putative ortholog of hBCL3, a gene frequently altered in chronic lymphocytic leukemia. Thus, the combination of functional genomic mapping approaches in model organisms may facilitate the identification and characterization of genes involved in cancer and, perhaps, other human diseases.

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Year:  2002        PMID: 11778048     DOI: 10.1126/science.1065986

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  101 in total

Review 1.  Structural genomics: a pipeline for providing structures for the biologist.

Authors:  Mark R Chance; Anne R Bresnick; Stephen K Burley; Jian-Sheng Jiang; Christopher D Lima; Andrej Sali; Steven C Almo; Jeffrey B Bonanno; John A Buglino; Simon Boulton; Hua Chen; Narayanan Eswar; Guoshun He; Raymond Huang; Valentin Ilyin; Linda McMahan; Ursula Pieper; Soumya Ray; Marc Vidal; Li Kai Wang
Journal:  Protein Sci       Date:  2002-04       Impact factor: 6.725

2.  Assessing experimentally derived interactions in a small world.

Authors:  Debra S Goldberg; Frederick P Roth
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-03       Impact factor: 11.205

3.  A network of rice genes associated with stress response and seed development.

Authors:  Bret Cooper; Joseph D Clarke; Paul Budworth; Joel Kreps; Don Hutchison; Sylvia Park; Sonia Guimil; Molly Dunn; Peter Luginbühl; Cinzia Ellero; Stephen A Goff; Jane Glazebrook
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-08       Impact factor: 11.205

4.  Gene function: getting specific, generally speaking.

Authors:  S W Michnick; F-X Campbell Valois
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-16       Impact factor: 11.205

Review 5.  Network genomics--a novel approach for the analysis of biological systems in the post-genomic era.

Authors:  Christian V Forst
Journal:  Mol Biol Rep       Date:  2002-09       Impact factor: 2.316

6.  The German cDNA network: cDNAs, functional genomics and proteomics.

Authors:  Stefan Wiemann; Stephanie Bechtel; Detlev Bannasch; Rainer Pepperkok; Annemarie Poustka
Journal:  J Struct Funct Genomics       Date:  2003

7.  Saccharomyces cerevisiae Sin3p facilitates DNA double-strand break repair.

Authors:  Ali Jazayeri; Andrew D McAinsh; Stephen P Jackson
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-07       Impact factor: 11.205

8.  Alternative induction of meiotic recombination from single-base lesions of DNA deaminases.

Authors:  Siim Pauklin; Julia S Burkert; Julie Martin; Fekret Osman; Sandra Weller; Simon J Boulton; Matthew C Whitby; Svend K Petersen-Mahrt
Journal:  Genetics       Date:  2009-02-23       Impact factor: 4.562

9.  A first version of the Caenorhabditis elegans Promoterome.

Authors:  Denis Dupuy; Qian-Ru Li; Bart Deplancke; Mike Boxem; Tong Hao; Philippe Lamesch; Reynaldo Sequerra; Stephanie Bosak; Lynn Doucette-Stamm; Ian A Hope; David E Hill; Albertha J M Walhout; Marc Vidal
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

10.  Toward improving Caenorhabditis elegans phenome mapping with an ORFeome-based RNAi library.

Authors:  Jean-François Rual; Julian Ceron; John Koreth; Tong Hao; Anne-Sophie Nicot; Tomoko Hirozane-Kishikawa; Jean Vandenhaute; Stuart H Orkin; David E Hill; Sander van den Heuvel; Marc Vidal
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

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