Literature DB >> 19340599

Design of novel antituberculosis compounds using graph-theoretical and substructural approaches.

Alejandro Speck Planche1, Marcus Tulius Scotti, América García López, Vicente de Paulo Emerenciano, Enrique Molina Pérez, Eugenio Uriarte.   

Abstract

The increasing resistance of Mycobacterium tuberculosis to the existing drugs has alarmed the worldwide scientific community. In an attempt to overcome this problem, two models for the design and prediction of new antituberculosis agents were obtained. The first used a mixed approach, containing descriptors based on fragments and the topological substructural molecular design approach (TOPS-MODE) descriptors. The other model used a combination of two-dimensional (2D) and three-dimensional (3D) descriptors. A data set of 167 compounds with great structural variability, 72 of them antituberculosis agents and 95 compounds belonging to other pharmaceutical categories, was analyzed. The first model showed sensitivity, specificity, and accuracy values above 80% and the second one showed values higher than 75% for these statistical indices. Subsequently, 12 structures of imidazoles not included in this study were designed, taking into account the two models. In both cases accuracy was 100%, showing that the methodology in silico developed by us is promising for the rational design of antituberculosis drugs.

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Year:  2009        PMID: 19340599     DOI: 10.1007/s11030-009-9129-9

Source DB:  PubMed          Journal:  Mol Divers        ISSN: 1381-1991            Impact factor:   2.943


  53 in total

1.  Quantitative structure--toxicity relationships using TOPS-MODE. 1. Nitrobenzene toxicity to Tetrahymena pyriformis.

Authors:  E Estrada; E Uriarte
Journal:  SAR QSAR Environ Res       Date:  2001       Impact factor: 3.000

2.  Molecular topology: a useful tool for the search of new antibacterials.

Authors:  C de Gregorio Alapont; R García-Domenech; J Gálvez; M J Ros; S Wolski; M D García
Journal:  Bioorg Med Chem Lett       Date:  2000-09-04       Impact factor: 2.823

3.  Structural diversities of active site in clinical azole-bound forms between sterol 14alpha-demethylases (CYP51s) from human and Mycobacterium tuberculosis.

Authors:  Koji Matsuura; Shiro Yoshioka; Takehiko Tosha; Hiroshi Hori; Koichiro Ishimori; Teizo Kitagawa; Isao Morishima; Norio Kagawa; Michael R Waterman
Journal:  J Biol Chem       Date:  2004-12-20       Impact factor: 5.157

4.  Prediction of quinolone activity against Mycobacterium avium by molecular topology and virtual computational screening.

Authors:  R Gozalbes; M Brun-Pascaud; R García-Domenech; J Gálvez; P M Girard; J P Doucet; F Derouin
Journal:  Antimicrob Agents Chemother       Date:  2000-10       Impact factor: 5.191

5.  Three-dimensional structure of M. tuberculosis dihydrofolate reductase reveals opportunities for the design of novel tuberculosis drugs.

Authors:  R Li; R Sirawaraporn; P Chitnumsub; W Sirawaraporn; J Wooden; F Athappilly; S Turley; W G Hol
Journal:  J Mol Biol       Date:  2000-01-14       Impact factor: 5.469

6.  Ligand-based virtual screening and in silico design of new antimalarial compounds using nonstochastic and stochastic total and atom-type quadratic maps.

Authors:  Yovani Marrero-Ponce; Maité Iyarreta-Veitía; Alina Montero-Torres; Carlos Romero-Zaldivar; Carlos A Brandt; Priscilla E Avila; Karin Kirchgatter; Yanetsy Machado
Journal:  J Chem Inf Model       Date:  2005 Jul-Aug       Impact factor: 4.956

7.  Quantitative structure-toxicity relationships using TOPS-MODE. 2. Neurotoxicity of a non-congeneric series of solvents.

Authors:  E Estrada; E Molina; E Uriarte
Journal:  SAR QSAR Environ Res       Date:  2001       Impact factor: 3.000

8.  In silico studies toward the discovery of new anti-HIV nucleoside compounds with the use of TOPS-MODE and 2D/3D connectivity indices. 1. Pyrimidyl derivatives.

Authors:  Ernesto Estrada; Santiago Vilar; Eugenio Uriarte; Yaquelin Gutierrez
Journal:  J Chem Inf Comput Sci       Date:  2002 Sep-Oct

9.  Sugar binding in lactose permease: anomeric state of a disaccharide influences binding structure.

Authors:  Jeffery B Klauda; Bernard R Brooks
Journal:  J Mol Biol       Date:  2007-02-07       Impact factor: 5.469

10.  Synthesis and quantitative structure--activity relationships of some antibacterial 3-formylrifamycin SV N-(4-substituted phenyl)piperazinoacethydrazones.

Authors:  J A Kiritsy; D K Yung; D E Mahony
Journal:  J Med Chem       Date:  1978-12       Impact factor: 7.446

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  7 in total

1.  In silico design of multi-target inhibitors for C-C chemokine receptors using substructural descriptors.

Authors:  Alejandro Speck-Planche; Valeria V Kleandrova
Journal:  Mol Divers       Date:  2011-10-22       Impact factor: 2.943

2.  QSAR model toward the rational design of new agrochemical fungicides with a defined resistance risk using substructural descriptors.

Authors:  Alejandro Speck-Planche; Valeria V Kleandrova; Julio A Rojas-Vargas
Journal:  Mol Divers       Date:  2011-06-02       Impact factor: 2.943

Review 3.  Computational databases, pathway and cheminformatics tools for tuberculosis drug discovery.

Authors:  Sean Ekins; Joel S Freundlich; Inhee Choi; Malabika Sarker; Carolyn Talcott
Journal:  Trends Microbiol       Date:  2010-12-02       Impact factor: 17.079

4.  Fragment-based optimization of small molecule CXCL12 inhibitors for antagonizing the CXCL12/CXCR4 interaction.

Authors:  Joshua J Ziarek; Yan Liu; Emmanuel Smith; Guolin Zhang; Francis C Peterson; Jun Chen; Yongping Yu; Yu Chen; Brian F Volkman; Rongshi Li
Journal:  Curr Top Med Chem       Date:  2012       Impact factor: 3.295

5.  Bigger data, collaborative tools and the future of predictive drug discovery.

Authors:  Sean Ekins; Alex M Clark; S Joshua Swamidass; Nadia Litterman; Antony J Williams
Journal:  J Comput Aided Mol Des       Date:  2014-06-19       Impact factor: 3.686

6.  Fusing dual-event data sets for Mycobacterium tuberculosis machine learning models and their evaluation.

Authors:  Sean Ekins; Joel S Freundlich; Robert C Reynolds
Journal:  J Chem Inf Model       Date:  2013-10-30       Impact factor: 4.956

7.  Enhancing hit identification in Mycobacterium tuberculosis drug discovery using validated dual-event Bayesian models.

Authors:  Sean Ekins; Robert C Reynolds; Scott G Franzblau; Baojie Wan; Joel S Freundlich; Barry A Bunin
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

  7 in total

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