Literature DB >> 16143842

Chloroplast RNA processing and stability.

David L Herrin1, Jöerg Nickelsen.   

Abstract

Primary chloroplast transcripts are processed in a number of ways, including intron splicing, internal cleavage of polycistronic RNAs, and endonucleolytic or exonucleolytic cleavages at the transcript termini. All chloroplast RNAs are also subject to degradation, although a curious feature of many chloroplast mRNAs is their relative longevity. Some of these processes, e.g., psbA splicing and stability of a number of chloroplast mRNAs, are regulated in response to light-dark cycles or nutrient availability. This review highlights recent advances in our understanding of these processes in the model organism Chlamydomonas reinhardtii, focusing on results since the extensive reviews published in 1998 [Herrin DL et al. 1998 (pp. 183-195), Nickelsen Y 1998 (pp. 151-163), Stern DB and Drager RG 1998 (pp. 164-182), in Rochaix JD et al. (eds) The Molecular Biology of Chloroplasts and Mitochondria in Chlamydomonas. Kluwer Academic Publishers, Dordrecht, The Netherlands]. We also allude to studies with other organisms, and to the potential impact of the Chlamydomonas genome project where appropriate.

Entities:  

Year:  2004        PMID: 16143842     DOI: 10.1007/s11120-004-2741-8

Source DB:  PubMed          Journal:  Photosynth Res        ISSN: 0166-8595            Impact factor:   3.573


  81 in total

1.  cis- and trans-Acting determinants for translation of psbD mRNA in Chlamydomonas reinhardtii.

Authors:  F Ossenbühl; J Nickelsen
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

2.  Mutagenesis of a light-regulated psbA intron reveals the importance of efficient splicing for photosynthetic growth.

Authors:  Jaesung Lee; David L Herrin
Journal:  Nucleic Acids Res       Date:  2003-08-01       Impact factor: 16.971

3.  The redox state regulates RNA degradation in the chloroplast of Chlamydomonas reinhardtii.

Authors:  M L Salvador; U Klein
Journal:  Plant Physiol       Date:  1999-12       Impact factor: 8.340

4.  In vitro self-splicing reactions of the chloroplast group I intron Cr.LSU from Chlamydomonas reinhardtii and in vivo manipulation via gene-replacement.

Authors:  A J Thompson; D L Herrin
Journal:  Nucleic Acids Res       Date:  1991-12-11       Impact factor: 16.971

5.  The Chlamydomonas reinhardtii organellar genomes respond transcriptionally and post-transcriptionally to abiotic stimuli.

Authors:  Jason W Lilly; Jude E Maul; David B Stern
Journal:  Plant Cell       Date:  2002-11       Impact factor: 11.277

6.  Function of the Neurospora crassa mitochondrial tyrosyl-tRNA synthetase in RNA splicing. Role of the idiosyncratic N-terminal extension and different modes of interaction with different group I introns.

Authors:  G Mohr; R Rennard; A D Cherniack; J Stryker; A M Lambowitz
Journal:  J Mol Biol       Date:  2001-03-16       Impact factor: 5.469

7.  Mutations at three different nuclear loci of Chlamydomonas suppress a defect in chloroplast psbD mRNA accumulation.

Authors:  J Nickelsen
Journal:  Curr Genet       Date:  2000-02       Impact factor: 3.886

8.  Identification of cis-acting RNA leader elements required for chloroplast psbD gene expression in Chlamydomonas.

Authors:  J Nickelsen; M Fleischmann; E Boudreau; M Rahire; J D Rochaix
Journal:  Plant Cell       Date:  1999-05       Impact factor: 11.277

9.  A 3' stem/loop structure of the Chlamydomonas chloroplast atpB gene regulates mRNA accumulation in vivo.

Authors:  D B Stern; E R Radwanski; K L Kindle
Journal:  Plant Cell       Date:  1991-03       Impact factor: 11.277

10.  5' sequences are important positive and negative determinants of the longevity of Chlamydomonas chloroplast gene transcripts.

Authors:  M L Salvador; U Klein; L Bogorad
Journal:  Proc Natl Acad Sci U S A       Date:  1993-02-15       Impact factor: 11.205

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  26 in total

1.  The microalga Chlamydomonas reinhardtii as a platform for the production of human protein therapeutics.

Authors:  Beth A Rasala; Stephen P Mayfield
Journal:  Bioeng Bugs       Date:  2011 Jan-Feb

2.  Relationship between mRNA levels and protein accumulation in a chloroplast promoter-mutant of Chlamydomonas reinhardtii.

Authors:  Birgit Klinkert; Christian Schwarz; Stephan Pohlmann; Yves Pierre; Jacqueline Girard-Bascou; Jörg Nickelsen
Journal:  Mol Genet Genomics       Date:  2005-10-22       Impact factor: 3.291

3.  Experimental reconstruction of functional gene transfer from the tobacco plastid genome to the nucleus.

Authors:  Sandra Stegemann; Ralph Bock
Journal:  Plant Cell       Date:  2006-11-03       Impact factor: 11.277

4.  Nuclear, chloroplast, and mitochondrial transcript abundance along a maize leaf developmental gradient.

Authors:  A Bruce Cahoon; Elizabeth M Takacs; Richard M Sharpe; David B Stern
Journal:  Plant Mol Biol       Date:  2007-10-12       Impact factor: 4.076

Review 5.  Chloroplast translation regulation.

Authors:  Julia Marín-Navarro; Andrea L Manuell; Joann Wu; Stephen P Mayfield
Journal:  Photosynth Res       Date:  2007-07-28       Impact factor: 3.573

6.  Transcriptome analysis of the Euglena gracilis plastid chromosome.

Authors:  Simon Geimer; Anna Belicová; Julia Legen; Silvia Sláviková; Reinhold G Herrmann; Juraj Krajcovic
Journal:  Curr Genet       Date:  2009-06-02       Impact factor: 3.886

Review 7.  Photosynthetic gene expression in higher plants.

Authors:  James O Berry; Pradeep Yerramsetty; Amy M Zielinski; Christopher M Mure
Journal:  Photosynth Res       Date:  2013-07-10       Impact factor: 3.573

8.  Long transcripts from dinoflagellate chloroplast minicircles suggest "rolling circle" transcription.

Authors:  Yunkun Dang; Beverley R Green
Journal:  J Biol Chem       Date:  2009-11-30       Impact factor: 5.157

Review 9.  Organization and expression of organellar genomes.

Authors:  Adrian C Barbrook; Christopher J Howe; Davy P Kurniawan; Sarah J Tarr
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2010-03-12       Impact factor: 6.237

10.  Post-transcriptional control of chloroplast gene expression.

Authors:  Eva M del Campo
Journal:  Gene Regul Syst Bio       Date:  2009-03-12
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