Literature DB >> 11752308

The IMB Jena Image Library of Biological Macromolecules: 2002 update.

Jan Reichert1, Jürgen Sühnel.   

Abstract

The IMB Jena Image Library of Biological Macromolecules (http://www.imb-jena.de/IMAGE.html) is aimed at a better dissemination of information on three-dimensional biopolymer structures with an emphasis on visualization and analysis. It provides access to all structure entries deposited at the Protein Data Bank (PDB) and Nucleic Acid Database (NDB). In addition, basic information on the architecture of biological macromolecules is offered. Recent developments include a site database and an analysis tool that identifies all residues surrounding hetero components or sites according to geometrical criteria. This enables one to search for all structures with a certain pattern of amino acids/nucleotides/water adjacent to hetero components or sites. A new PDB/SWISS-PROT cross-reference database combines information from both PDB and SWISS-PROT, thus providing significantly more cross-references than either PDB or SWISS-PROT. The existing brief descriptions of X-ray, NMR and FTIR methods for structure determination are supplemented by information on circular dichroism.

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Year:  2002        PMID: 11752308      PMCID: PMC99077          DOI: 10.1093/nar/30.1.253

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  8 in total

1.  The IMB Jena Image Library of biological macromolecules.

Authors:  J Reichert; A Jabs; P Slickers; J Sühnel
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

3.  SMART: a web-based tool for the study of genetically mobile domains.

Authors:  J Schultz; R R Copley; T Doerks; C P Ponting; P Bork
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

4.  The InterPro database, an integrated documentation resource for protein families, domains and functional sites.

Authors:  R Apweiler; T K Attwood; A Bairoch; A Bateman; E Birney; M Biswas; P Bucher; L Cerutti; F Corpet; M D Croning; R Durbin; L Falquet; W Fleischmann; J Gouzy; H Hermjakob; N Hulo; I Jonassen; D Kahn; A Kanapin; Y Karavidopoulou; R Lopez; B Marx; N J Mulder; T M Oinn; M Pagni; F Servant; C J Sigrist; E M Zdobnov
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

5.  The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids.

Authors:  H M Berman; W K Olson; D L Beveridge; J Westbrook; A Gelbin; T Demeny; S H Hsieh; A R Srinivasan; B Schneider
Journal:  Biophys J       Date:  1992-09       Impact factor: 4.033

6.  The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

Authors:  A Bairoch; R Apweiler
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

7.  Image library of biological macromolecules.

Authors:  J Sühnel
Journal:  Comput Appl Biosci       Date:  1996-06

8.  The Protein Data Bank: a computer-based archival file for macromolecular structures.

Authors:  F C Bernstein; T F Koetzle; G J Williams; E F Meyer; M D Brice; J R Rodgers; O Kennard; T Shimanouchi; M Tasumi
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

  8 in total
  17 in total

1.  Molecular dynamics reveals the stabilizing role of loop closing residues in kissing interactions: comparison between TAR-TAR* and TAR-aptamer.

Authors:  François Beaurain; Carmelo Di Primo; Jean Jacques Toulmé; Michel Laguerre
Journal:  Nucleic Acids Res       Date:  2003-07-15       Impact factor: 16.971

Review 2.  Protein structure databases.

Authors:  Roman A Laskowski
Journal:  Mol Biotechnol       Date:  2011-06       Impact factor: 2.695

3.  Structural insights into species-specific features of the ribosome from the pathogen Staphylococcus aureus.

Authors:  Zohar Eyal; Donna Matzov; Miri Krupkin; Itai Wekselman; Susanne Paukner; Ella Zimmerman; Haim Rozenberg; Anat Bashan; Ada Yonath
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-13       Impact factor: 11.205

4.  A human vitamin D receptor mutant activated by cholecalciferol.

Authors:  Amanda M Ousley; Hilda S Castillo; Anna Duraj-Thatte; Donald F Doyle; Bahareh Azizi
Journal:  J Steroid Biochem Mol Biol       Date:  2011-03-10       Impact factor: 4.292

5.  PDBsum new things.

Authors:  Roman A Laskowski
Journal:  Nucleic Acids Res       Date:  2008-11-07       Impact factor: 16.971

Review 6.  Basic pathologies of neurodegenerative dementias and their relevance for state-of-the-art molecular imaging studies.

Authors:  Alexander Drzezga
Journal:  Eur J Nucl Med Mol Imaging       Date:  2008-03       Impact factor: 9.236

7.  TMPad: an integrated structural database for helix-packing folds in transmembrane proteins.

Authors:  Allan Lo; Cheng-Wei Cheng; Yi-Yuan Chiu; Ting-Yi Sung; Wen-Lian Hsu
Journal:  Nucleic Acids Res       Date:  2011-01       Impact factor: 16.971

8.  SuperLigands - a database of ligand structures derived from the Protein Data Bank.

Authors:  Elke Michalsky; Mathias Dunkel; Andrean Goede; Robert Preissner
Journal:  BMC Bioinformatics       Date:  2005-05-19       Impact factor: 3.169

9.  Coupled mutation finder: a new entropy-based method quantifying phylogenetic noise for the detection of compensatory mutations.

Authors:  Mehmet Gültas; Martin Haubrock; Nesrin Tüysüz; Stephan Waack
Journal:  BMC Bioinformatics       Date:  2012-09-11       Impact factor: 3.169

10.  SuperSite: dictionary of metabolite and drug binding sites in proteins.

Authors:  Raphael André Bauer; Stefan Günther; Dominic Jansen; Carolin Heeger; Paul Florian Thaben; Robert Preissner
Journal:  Nucleic Acids Res       Date:  2008-10-08       Impact factor: 16.971

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