Literature DB >> 11752349

LIGAND: database of chemical compounds and reactions in biological pathways.

Susumu Goto1, Yasushi Okuno, Masahiro Hattori, Takaaki Nishioka, Minoru Kanehisa.   

Abstract

LIGAND is a composite database comprising three sections: COMPOUND for the information about metabolites and other chemical compounds, REACTION for the collection of substrate-product relations representing metabolic and other reactions, and ENZYME for the information about enzyme molecules. The current release (as of September 7, 2001) includes 7298 compounds, 5166 reactions and 3829 enzymes. In addition to the keyword search provided by the DBGET/LinkDB system, a substructure search to the COMPOUND and REACTION sections is now available through the World Wide Web (http://www.genome.ad.jp/ligand/). LIGAND may be also downloaded by anonymous FTP (ftp://ftp.genome.ad.jp/pub/kegg/ligand/).

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Year:  2002        PMID： 11752349      PMCID： PMC99090          DOI： 10.1093/nar/30.1.402

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  10 in total

1.  The University of Minnesota Biocatalysis/Biodegradation Database: emphasizing enzymes.

Authors:  L B Ellis; C D Hershberger; E M Bryan; L P Wackett
Journal:  Nucleic Acids Res       Date:  2001-01-01       Impact factor: 16.971

2.  The PROSITE database, its status in 2002.

Authors:  Laurent Falquet; Marco Pagni; Philipp Bucher; Nicolas Hulo; Christian J A Sigrist; Kay Hofmann; Amos Bairoch
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

3.  GenBank.

Authors:  Dennis A Benson; Ilene Karsch-Mizrachi; David J Lipman; James Ostell; Barbara A Rapp; David L Wheeler
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

4.  The KEGG databases at GenomeNet.

Authors:  Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Akihiro Nakaya
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

5.  The Protein Data Bank: unifying the archive.

Authors:  John Westbrook; Zukang Feng; Shri Jain; T N Bhat; Narmada Thanki; Veerasamy Ravichandran; Gary L Gilliland; Wolfgang Bluhm; Helge Weissig; Douglas S Greer; Philip E Bourne; Helen M Berman
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

6.  LIGAND: chemical database for enzyme reactions.

Authors:  S Goto; T Nishioka; M Kanehisa
Journal:  Bioinformatics       Date:  1998       Impact factor: 6.937

7.  DBGET/LinkDB: an integrated database retrieval system.

Authors:  W Fujibuchi; S Goto; H Migimatsu; I Uchiyama; A Ogiwara; Y Akiyama; M Kanehisa
Journal:  Pac Symp Biocomput       Date:  1998

Review 8.  Linking databases and organisms: GenomeNet resources in Japan.

Authors:  M Kanehisa
Journal:  Trends Biochem Sci       Date:  1997-11       Impact factor: 13.807

9.  A database for post-genome analysis.

Authors:  M Kanehisa
Journal:  Trends Genet       Date:  1997-09       Impact factor: 11.639

10.  The status of online Mendelian inheritance in man (OMIM) medio 1994.

Authors:  P Pearson; C Francomano; P Foster; C Bocchini; P Li; V McKusick
Journal:  Nucleic Acids Res       Date:  1994-09       Impact factor: 16.971
  10 in total
  79 in total

1.  The KEGG databases at GenomeNet.

Authors:  Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Akihiro Nakaya
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971

Review 2.  Microbial genomics and the periodic table.

Authors:  Lawrence P Wackett; Anthony G Dodge; Lynda B M Ellis
Journal:  Appl Environ Microbiol       Date:  2004-02       Impact factor: 4.792

3.  The KEGG resource for deciphering the genome.

Authors:  Minoru Kanehisa; Susumu Goto; Shuichi Kawashima; Yasushi Okuno; Masahiro Hattori
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

4.  PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) in 2003.

Authors:  Tamotsu Noguchi; Yutaka Akiyama
Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

5.  PathMiner: predicting metabolic pathways by heuristic search.

Authors:  D C McShan; S Rao; I Shah
Journal:  Bioinformatics       Date:  2003-09-01       Impact factor: 6.937

Review 6.  Stable isotope-resolved metabolomics and applications for drug development.

Authors:  Teresa W-M Fan; Pawel K Lorkiewicz; Katherine Sellers; Hunter N B Moseley; Richard M Higashi; Andrew N Lane
Journal:  Pharmacol Ther       Date:  2011-12-23       Impact factor: 12.310

7.  Superessential reactions in metabolic networks.

Authors:  Aditya Barve; João Frederico Matias Rodrigues; Andreas Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-16       Impact factor: 11.205

Review 8.  Microbial metabolomics: replacing trial-and-error by the unbiased selection and ranking of targets.

Authors:  Mariët J van der Werf; Renger H Jellema; Thomas Hankemeier
Journal:  J Ind Microbiol Biotechnol       Date:  2005-05-14       Impact factor: 3.346

9.  Discovery of ligands for a novel target, the human telomerase RNA, based on flexible-target virtual screening and NMR.

Authors:  Irene Gómez Pinto; Christophe Guilbert; Nikolai B Ulyanov; Jay Stearns; Thomas L James
Journal:  J Med Chem       Date:  2008-11-27       Impact factor: 7.446

10.  Metabolomics approach for determining growth-specific metabolites based on Fourier transform ion cyclotron resonance mass spectrometry.

Authors:  Hiroki Takahashi; Kosuke Kai; Yoko Shinbo; Kenichi Tanaka; Daisaku Ohta; Taku Oshima; Md Altaf-Ul-Amin; Ken Kurokawa; Naotake Ogasawara; Shigehiko Kanaya
Journal:  Anal Bioanal Chem       Date:  2008-06-16       Impact factor: 4.142
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