Literature DB >> 11751045

Atomic motion in enzymatic reaction coordinates.

V L Schramm1, W Shi.   

Abstract

Atomic excursions of reactants in enzymatic catalytic sites can be estimated from high-resolution crystal structures of enzyme complexes with substrates, transition state analog inhibitors and products. Transition state structures, defined from kinetic isotope effect studies, are compared to crystallographic structures to validate the properties of the transition state analog. Atomic excursions in enzymatic catalytic sites can differ from those in solution and define the role of the enzymatic catalyst in directing atomic motion.

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Year:  2001        PMID: 11751045     DOI: 10.1016/s0959-440x(01)00269-x

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  19 in total

1.  Insights into the serine protease mechanism from atomic resolution structures of trypsin reaction intermediates.

Authors:  Evette S Radisky; Justin M Lee; Chia-Jung Karen Lu; Daniel E Koshland
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-24       Impact factor: 11.205

Review 2.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

3.  Atomic detail of chemical transformation at the transition state of an enzymatic reaction.

Authors:  Suwipa Saen-Oon; Sara Quaytman-Machleder; Vern L Schramm; Steven D Schwartz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-22       Impact factor: 11.205

4.  Testing geometrical discrimination within an enzyme active site: constrained hydrogen bonding in the ketosteroid isomerase oxyanion hole.

Authors:  Paul A Sigala; Daniel A Kraut; Jose M M Caaveiro; Brandon Pybus; Eliza A Ruben; Dagmar Ringe; Gregory A Petsko; Daniel Herschlag
Journal:  J Am Chem Soc       Date:  2008-09-23       Impact factor: 15.419

5.  Transition State Analysis of Adenosine Triphosphate Phosphoribosyltransferase.

Authors:  Gert-Jan Moggré; Myles B Poulin; Peter C Tyler; Vern L Schramm; Emily J Parker
Journal:  ACS Chem Biol       Date:  2017-09-19       Impact factor: 5.100

6.  Structural basis for substrate selectivity and nucleophilic substitution mechanisms in human adenine phosphoribosyltransferase catalyzed reaction.

Authors:  Mohammad Ozeir; Jessica Huyet; Marie-Claude Burgevin; Benoît Pinson; Françoise Chesney; Jean-Marc Remy; Abdul Rauf Siddiqi; Roland Lupoli; Grégory Pinon; Christelle Saint-Marc; Jean-François Gibert; Renaud Morales; Irène Ceballos-Picot; Robert Barouki; Bertrand Daignan-Fornier; Anne Olivier-Bandini; Franck Augé; Pierre Nioche
Journal:  J Biol Chem       Date:  2019-06-03       Impact factor: 5.157

7.  A phosphoenzyme mimic, overlapping catalytic sites and reaction coordinate motion for human NAMPT.

Authors:  Emmanuel S Burgos; Meng-Chiao Ho; Steven C Almo; Vern L Schramm
Journal:  Proc Natl Acad Sci U S A       Date:  2009-08-04       Impact factor: 11.205

8.  Crystal structure and snapshots along the reaction pathway of a family 51 alpha-L-arabinofuranosidase.

Authors:  Klaus Hövel; Dalia Shallom; Karsten Niefind; Valery Belakhov; Gil Shoham; Timor Baasov; Yuval Shoham; Dietmar Schomburg
Journal:  EMBO J       Date:  2003-10-01       Impact factor: 11.598

Review 9.  Transition States, analogues, and drug development.

Authors:  Vern L Schramm
Journal:  ACS Chem Biol       Date:  2013-01-04       Impact factor: 5.100

10.  Hidden alternative structures of proline isomerase essential for catalysis.

Authors:  James S Fraser; Michael W Clarkson; Sheena C Degnan; Renske Erion; Dorothee Kern; Tom Alber
Journal:  Nature       Date:  2009-12-03       Impact factor: 49.962

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