Literature DB >> 11741530

Recognition of specific DNA sequences.

C W Garvie1, C Wolberger.   

Abstract

Proteins that recognize specific DNA sequences play a central role in the regulation of transcription. The tremendous increase in structural information on protein-DNA complexes has uncovered a remarkable structural diversity in DNA binding folds, while at the same time revealing common themes in binding to target sites in the genome.

Mesh：

Substances：

Year:  2001        PMID： 11741530     DOI： 10.1016/s1097-2765(01)00392-6

Source DB:  PubMed          Journal:  Mol Cell        ISSN： 1097-2765            Impact factor:   17.970


  124 in total

1.  Preparation and optimization of protein-DNA complexes suitable for detailed NMR studies.

Authors:  My D Sam; Robert T Clubb
Journal:  Methods Mol Biol       Date:  2012

Review 2.  How do site-specific DNA-binding proteins find their targets?

Authors:  Stephen E Halford; John F Marko
Journal:  Nucleic Acids Res       Date:  2004-06-03       Impact factor: 16.971

Review 3.  Transcriptional activators and activation mechanisms.

Authors:  Jun Ma
Journal:  Protein Cell       Date:  2011-12-17       Impact factor: 14.870

Review 4.  Flexibility and Disorder in Gene Regulation: LacI/GalR and Hox Proteins.

Authors:  Sarah E Bondos; Liskin Swint-Kruse; Kathleen S Matthews
Journal:  J Biol Chem       Date:  2015-09-04       Impact factor: 5.157

Review 5.  Origins of specificity in protein-DNA recognition.

Authors:  Remo Rohs; Xiangshu Jin; Sean M West; Rohit Joshi; Barry Honig; Richard S Mann
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

6.  Measurement of the contributions of 1D and 3D pathways to the translocation of a protein along DNA.

Authors:  Darren M Gowers; Geoffrey G Wilson; Stephen E Halford
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-21       Impact factor: 11.205

7.  Calculation of absolute protein-ligand binding free energy from computer simulations.

Authors:  Hyung-June Woo; Benoît Roux
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-02       Impact factor: 11.205

8.  Energetic funnel facilitates facilitated diffusion.

Authors:  Massimo Cencini; Simone Pigolotti
Journal:  Nucleic Acids Res       Date:  2018-01-25       Impact factor: 16.971

9.  Experimental maps of DNA structure at nucleotide resolution distinguish intrinsic from protein-induced DNA deformations.

Authors:  Robert N Azad; Dana Zafiropoulos; Douglas Ober; Yining Jiang; Tsu-Pei Chiu; Jared M Sagendorf; Remo Rohs; Thomas D Tullius
Journal:  Nucleic Acids Res       Date:  2018-03-16       Impact factor: 16.971

Review 10.  Computations of standard binding free energies with molecular dynamics simulations.

Authors:  Yuqing Deng; Benoît Roux
Journal:  J Phys Chem B       Date:  2009-02-26       Impact factor: 2.991
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.