Literature DB >> 22167677

Preparation and optimization of protein-DNA complexes suitable for detailed NMR studies.

My D Sam1, Robert T Clubb.   

Abstract

This chapter describes the methods to form and optimize samples of protein-DNA complexes that are suitable for detailed structure and dynamics studies by NMR spectroscopy.

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Year:  2012        PMID： 22167677      PMCID： PMC3590071          DOI： 10.1007/978-1-61779-480-3_13

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  23 in total

1.  The Mu repressor-DNA complex contains an immobilized 'wing' within the minor groove.

Authors:  J M Wojciak; J Iwahara; R T Clubb
Journal:  Nat Struct Biol       Date:  2001-01

Review 2.  Recognition of specific DNA sequences.

Authors:  C W Garvie; C Wolberger
Journal:  Mol Cell       Date:  2001-11       Impact factor: 17.970

3.  Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes.

Authors:  Charalampos G Kalodimos; Nikolaos Biris; Alexandre M J J Bonvin; Marc M Levandoski; Marc Guennuegues; Rolf Boelens; Robert Kaptein
Journal:  Science       Date:  2004-07-16       Impact factor: 47.728

4.  Crystal structure of the excisionase-DNA complex from bacteriophage lambda.

Authors:  My D Sam; Duilio Cascio; Reid C Johnson; Robert T Clubb
Journal:  J Mol Biol       Date:  2004-04-23       Impact factor: 5.469

Review 5.  Transcription factors: structural families and principles of DNA recognition.

Authors:  C O Pabo; R T Sauer
Journal:  Annu Rev Biochem       Date:  1992       Impact factor: 23.643

6.  NMR structure of a specific DNA complex of Zn-containing DNA binding domain of GATA-1.

Authors:  J G Omichinski; G M Clore; O Schaad; G Felsenfeld; C Trainor; E Appella; S J Stahl; A M Gronenborn
Journal:  Science       Date:  1993-07-23       Impact factor: 47.728

7.  The structure of the Dead ringer-DNA complex reveals how AT-rich interaction domains (ARIDs) recognize DNA.

Authors:  Junji Iwahara; Mizuho Iwahara; Gary W Daughdrill; Joseph Ford; Robert T Clubb
Journal:  EMBO J       Date:  2002-03-01       Impact factor: 11.598

8.  Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium.

Authors:  N Tjandra; A Bax
Journal:  Science       Date:  1997-11-07       Impact factor: 47.728

Review 9.  The role of dynamic conformational ensembles in biomolecular recognition.

Authors:  David D Boehr; Ruth Nussinov; Peter E Wright
Journal:  Nat Chem Biol       Date:  2009-11       Impact factor: 15.040

10.  Determination of the nuclear magnetic resonance solution structure of an Antennapedia homeodomain-DNA complex.

Authors:  M Billeter; Y Q Qian; G Otting; M Müller; W Gehring; K Wüthrich
Journal:  J Mol Biol       Date:  1993-12-20       Impact factor: 5.469
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