Literature DB >> 11721056

Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21.

N Patil1, A J Berno, D A Hinds, W A Barrett, J M Doshi, C R Hacker, C R Kautzer, D H Lee, C Marjoribanks, D P McDonough, B T Nguyen, M C Norris, J B Sheehan, N Shen, D Stern, R P Stokowski, D J Thomas, M O Trulson, K R Vyas, K A Frazer, S P Fodor, D R Cox.   

Abstract

Global patterns of human DNA sequence variation (haplotypes) defined by common single nucleotide polymorphisms (SNPs) have important implications for identifying disease associations and human traits. We have used high-density oligonucleotide arrays, in combination with somatic cell genetics, to identify a large fraction of all common human chromosome 21 SNPs and to directly observe the haplotype structure defined by these SNPs. This structure reveals blocks of limited haplotype diversity in which more than 80% of a global human sample can typically be characterized by only three common haplotypes.

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Year:  2001        PMID: 11721056     DOI: 10.1126/science.1065573

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  276 in total

1.  Genome complexity reduction for SNP genotyping analysis.

Authors:  Barbara Jordan; Alain Charest; John F Dowd; Justin P Blumenstiel; Ru-fang Yeh Rf; Asiah Osman; David E Housman; John E Landers
Journal:  Proc Natl Acad Sci U S A       Date:  2002-03-05       Impact factor: 11.205

2.  A dynamic programming algorithm for haplotype block partitioning.

Authors:  Kui Zhang; Minghua Deng; Ting Chen; Michael S Waterman; Fengzhu Sun
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-28       Impact factor: 11.205

3.  Randomly distributed crossovers may generate block-like patterns of linkage disequilibrium: an act of genetic drift.

Authors:  Kun Zhang; Joshua M Akey; Ning Wang; Momiao Xiong; Ranajit Chakraborty; Li Jin
Journal:  Hum Genet       Date:  2003-04-03       Impact factor: 4.132

4.  A method for the assessment of disease associations with single-nucleotide polymorphism haplotypes and environmental variables in case-control studies.

Authors:  Lue Ping Zhao; Shuying Sue Li; Najma Khalid
Journal:  Am J Hum Genet       Date:  2003-04-16       Impact factor: 11.025

5.  Genetic maps of microsatellite and single-nucleotide polymorphism markers: are the distances accurate?

Authors:  Suzanne M Leal
Journal:  Genet Epidemiol       Date:  2003-05       Impact factor: 2.135

6.  Partition-ligation-expectation-maximization algorithm for haplotype inference with single-nucleotide polymorphisms.

Authors:  Zhaohui S Qin; Tianhua Niu; Jun S Liu
Journal:  Am J Hum Genet       Date:  2002-11       Impact factor: 11.025

7.  Properties of linkage disequilibrium (LD) maps.

Authors:  Weilhua Zhang; Andrew Collins; Nikolas Maniatis; William Tapper; Newton E Morton
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-16       Impact factor: 11.205

8.  Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history, recombination, and mutation.

Authors:  Ning Wang; Joshua M Akey; Kun Zhang; Ranajit Chakraborty; Li Jin
Journal:  Am J Hum Genet       Date:  2002-10-15       Impact factor: 11.025

9.  Haplotype inference in random population samples.

Authors:  Shin Lin; David J Cutler; Michael E Zwick; Aravinda Chakravarti
Journal:  Am J Hum Genet       Date:  2002-10-17       Impact factor: 11.025

10.  HapScope: a software system for automated and visual analysis of functionally annotated haplotypes.

Authors:  Jinghui Zhang; William L Rowe; Jeffery P Struewing; Kenneth H Buetow
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

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