Literature DB >> 12452179

Partition-ligation-expectation-maximization algorithm for haplotype inference with single-nucleotide polymorphisms.

Zhaohui S Qin, Tianhua Niu, Jun S Liu.   

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Year:  2002        PMID： 12452179      PMCID： PMC385113          DOI： 10.1086/344207

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN： 0002-9297            Impact factor:   11.025


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  13 in total

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2.  Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21.

Authors:  N Patil; A J Berno; D A Hinds; W A Barrett; J M Doshi; C R Hacker; C R Kautzer; D H Lee; C Marjoribanks; D P McDonough; B T Nguyen; M C Norris; J B Sheehan; N Shen; D Stern; R P Stokowski; D J Thomas; M O Trulson; K R Vyas; K A Frazer; S P Fodor; D R Cox
Journal:  Science       Date:  2001-11-23       Impact factor: 47.728

3.  Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms.

Authors:  Tianhua Niu; Zhaohui S Qin; Xiping Xu; Jun S Liu
Journal:  Am J Hum Genet       Date:  2001-11-26       Impact factor: 11.025

Review 4.  Candidate-gene approaches for studying complex genetic traits: practical considerations.

Authors:  Holly K Tabor; Neil J Risch; Richard M Myers
Journal:  Nat Rev Genet       Date:  2002-05       Impact factor: 53.242

5.  A dynamic programming algorithm for haplotype block partitioning.

Authors:  Kui Zhang; Minghua Deng; Ting Chen; Michael S Waterman; Fengzhu Sun
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-28       Impact factor: 11.205

6.  Identification of the cystic fibrosis gene: genetic analysis.

Authors:  B Kerem; J M Rommens; J A Buchanan; D Markiewicz; T K Cox; A Chakravarti; M Buchwald; L C Tsui
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7.  Bayesian analysis of haplotypes for linkage disequilibrium mapping.

Authors:  J S Liu; C Sabatti; J Teng; B J Keats; N Risch
Journal:  Genome Res       Date:  2001-10       Impact factor: 9.043

8.  HAPLO: a program using the EM algorithm to estimate the frequencies of multi-site haplotypes.

Authors:  M E Hawley; K K Kidd
Journal:  J Hered       Date:  1995 Sep-Oct       Impact factor: 2.645

9.  Sequence variation in the human angiotensin converting enzyme.

Authors:  M J Rieder; S L Taylor; A G Clark; D A Nickerson
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10.  DNA sequence diversity in a 9.7-kb region of the human lipoprotein lipase gene.

Authors:  D A Nickerson; S L Taylor; K M Weiss; A G Clark; R G Hutchinson; J Stengård; V Salomaa; E Vartiainen; E Boerwinkle; C F Sing
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  176 in total

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2.  A comparison of bayesian methods for haplotype reconstruction from population genotype data.

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Journal:  Am J Hum Genet       Date:  2003-10-20       Impact factor: 11.025

3.  Haplotype block partition with limited resources and applications to human chromosome 21 haplotype data.

Authors:  Kui Zhang; Fengzhu Sun; Michael S Waterman; Ting Chen
Journal:  Am J Hum Genet       Date:  2003-06-10       Impact factor: 11.025

4.  Haplotype information and linkage disequilibrium mapping for single nucleotide polymorphisms.

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5.  Large-scale single-nucleotide polymorphism (SNP) and haplotype analyses, using dense SNP Maps, of 199 drug-related genes in 752 subjects: the analysis of the association between uncommon SNPs within haplotype blocks and the haplotypes constructed with haplotype-tagging SNPs.

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6.  Finding haplotype tagging SNPs by use of principal components analysis.

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7.  Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies.

Authors:  Kui Zhang; Zhaohui S Qin; Jun S Liu; Ting Chen; Michael S Waterman; Fengzhu Sun
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8.  Asymptotic tests of association with multiple SNPs in linkage disequilibrium.

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Journal:  Genet Epidemiol       Date:  2009-09       Impact factor: 2.135

Review 9.  Haplotyping methods for pedigrees.

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10.  htSNPer1.0: software for haplotype block partition and htSNPs selection.

Authors:  Keyue Ding; Jing Zhang; Kaixin Zhou; Yan Shen; Xuegong Zhang
Journal:  BMC Bioinformatics       Date:  2005-03-01       Impact factor: 3.169
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