Literature DB >> 11690248

Dynamics of HIV infection: a cellular automata approach.

R M Zorzenon dos Santos1, S Coutinho.   

Abstract

We use a cellular automata model to study the evolution of human immunodeficiency virus (HIV) infection and the onset of acquired immunodeficiency syndrome (AIDS). The model takes into account the global features of the immune response to any pathogen, the fast mutation rate of the HIV, and a fair amount of spatial localization, which may occur in the lymph nodes. Our results reproduce the three-phase pattern observed in T cell and virus counts of infected patients, namely, the primary response, the clinical latency period, and the onset of AIDS. The dynamics of real experimental data is related to the transient behavior of our model and not to its steady state. We have also found that the infected cells organize themselves into spatial structures, which are responsible for the decrease on the concentration of uninfected cells, leading to AIDS.

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Year:  2001        PMID: 11690248     DOI: 10.1103/PhysRevLett.87.168102

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  19 in total

Review 1.  Systems immunology: a survey of modeling formalisms, applications and simulation tools.

Authors:  Vipin Narang; James Decraene; Shek-Yoon Wong; Bindu S Aiswarya; Andrew R Wasem; Shiang Rong Leong; Alexandre Gouaillard
Journal:  Immunol Res       Date:  2012-09       Impact factor: 2.829

2.  A Grid-based HIV expert system.

Authors:  Peter M A Sloot; Alexander V Boukhanovsky; Wilco Keulen; Alfredo Tirado-Ramos; Charles A Boucher
Journal:  J Clin Monit Comput       Date:  2005-10       Impact factor: 2.502

3.  A modular framework for multiscale, multicellular, spatiotemporal modeling of acute primary viral infection and immune response in epithelial tissues and its application to drug therapy timing and effectiveness.

Authors:  T J Sego; Josua O Aponte-Serrano; Juliano Ferrari Gianlupi; Samuel R Heaps; Kira Breithaupt; Lutz Brusch; Jessica Crawshaw; James M Osborne; Ellen M Quardokus; Richard K Plemper; James A Glazier
Journal:  PLoS Comput Biol       Date:  2020-12-21       Impact factor: 4.475

4.  Cell-free transmission of human adenovirus by passive mass transfer in cell culture simulated in a computer model.

Authors:  Artur Yakimovich; Heidi Gumpert; Christoph J Burckhardt; Verena A Lütschg; Andreas Jurgeit; Ivo F Sbalzarini; Urs F Greber
Journal:  J Virol       Date:  2012-07-11       Impact factor: 5.103

5.  Agent-based modeling of host-pathogen systems: The successes and challenges.

Authors:  Amy L Bauer; Catherine A A Beauchemin; Alan S Perelson
Journal:  Inf Sci (N Y)       Date:  2009-04-29       Impact factor: 6.795

Review 6.  Modeling Viral Spread.

Authors:  Frederik Graw; Alan S Perelson
Journal:  Annu Rev Virol       Date:  2016-08-31       Impact factor: 10.431

7.  From HIV infection to AIDS: a dynamically induced percolation transition?

Authors:  Christel Kamp; Stefan Bornholdt
Journal:  Proc Biol Sci       Date:  2002-10-07       Impact factor: 5.349

8.  Wave speed in excitable random networks with spatially constrained connections.

Authors:  Nikita Vladimirov; Roger D Traub; Yuhai Tu
Journal:  PLoS One       Date:  2011-06-03       Impact factor: 3.240

9.  Modeling formalisms in Systems Biology.

Authors:  Daniel Machado; Rafael S Costa; Miguel Rocha; Eugénio C Ferreira; Bruce Tidor; Isabel Rocha
Journal:  AMB Express       Date:  2011-12-05       Impact factor: 3.298

Review 10.  Modelling the course of an HIV infection: insights from ecology and evolution.

Authors:  Samuel Alizon; Carsten Magnus
Journal:  Viruses       Date:  2012-10-04       Impact factor: 5.048

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