Literature DB >> 11688714

Divergent evolution of (betaalpha)8-barrel enzymes.

M Henn-Sax1, B Höcker, M Wilmanns, R Sterner.   

Abstract

The (betaalpha)8-barrel is the most versatile and most frequently encountered fold among enzymes. It is an interesting question how the contemporary (betaalpha)8-barrels are evolutionarily related and by which mechanisms they evolved from more simple precursors. Comprehensive comparisons of amino acid sequences and three-dimensional structures suggest that a large fraction of the known (betaalpha)8-barrels have divergently evolved from a common ancestor. The mutational interconversion of enzymatic activities of several (betaalpha)8-barrels further supports their common evolutionary origin. Moreover, the high structural similarity between the N- and C-terminal (betaalpha)4 units of two (betaalpha)8-barrel enzymes from histidine biosynthesis indicates that the contemporary proteins evolved by tandem duplication and fusion of the gene of an ancestral 'half-barrel' precursor. In support of this hypothesis, recombinantly produced 'half-barrels' were shown to be folded, dimeric proteins.

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Year:  2001        PMID: 11688714     DOI: 10.1515/BC.2001.163

Source DB:  PubMed          Journal:  Biol Chem        ISSN: 1431-6730            Impact factor:   3.915


  17 in total

1.  Structural analysis of two enzymes catalysing reverse metabolic reactions implies common ancestry.

Authors:  Olga Mayans; Andreas Ivens; L Johan Nissen; Kasper Kirschner; Matthias Wilmanns
Journal:  EMBO J       Date:  2002-07-01       Impact factor: 11.598

2.  Mimicking enzyme evolution by generating new (betaalpha)8-barrels from (betaalpha)4-half-barrels.

Authors:  Birte Höcker; Jörg Claren; Reinhard Sterner
Journal:  Proc Natl Acad Sci U S A       Date:  2004-11-11       Impact factor: 11.205

3.  Structure of the methanofuran/methanopterin-biosynthetic enzyme MJ1099 from Methanocaldococcus jannaschii.

Authors:  Thomas A Bobik; Erick J Morales; Annie Shin; Duilio Cascio; Michael R Sawaya; Mark Arbing; Todd O Yeates; Madeline E Rasche
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-10-25       Impact factor: 1.056

Review 4.  Emergence of symmetric protein architecture from a simple peptide motif: evolutionary models.

Authors:  Michael Blaber; Jihun Lee; Liam Longo
Journal:  Cell Mol Life Sci       Date:  2012-07-13       Impact factor: 9.261

Review 5.  Triosephosphate isomerase: a highly evolved biocatalyst.

Authors:  R K Wierenga; E G Kapetaniou; R Venkatesan
Journal:  Cell Mol Life Sci       Date:  2010-08-07       Impact factor: 9.261

6.  Structural basis for substrate specificity in phosphate binding (beta/alpha)8-barrels: D-allulose 6-phosphate 3-epimerase from Escherichia coli K-12.

Authors:  Kui K Chan; Alexander A Fedorov; Elena V Fedorov; Steven C Almo; John A Gerlt
Journal:  Biochemistry       Date:  2008-08-14       Impact factor: 3.162

7.  Occurrence of a putative ancient-like isomerase involved in histidine and tryptophan biosynthesis.

Authors:  Francisco Barona-Gómez; David A Hodgson
Journal:  EMBO Rep       Date:  2003-03       Impact factor: 8.807

8.  Real-time evolution of new genes by innovation, amplification, and divergence.

Authors:  Joakim Näsvall; Lei Sun; John R Roth; Dan I Andersson
Journal:  Science       Date:  2012-10-19       Impact factor: 47.728

Review 9.  The origin and evolution of ribonucleotide reduction.

Authors:  Daniel Lundin; Gustav Berggren; Derek T Logan; Britt-Marie Sjöberg
Journal:  Life (Basel)       Date:  2015-02-27

10.  TransCent: computational enzyme design by transferring active sites and considering constraints relevant for catalysis.

Authors:  André Fischer; Nils Enkler; Gerd Neudert; Marco Bocola; Reinhard Sterner; Rainer Merkl
Journal:  BMC Bioinformatics       Date:  2009-02-10       Impact factor: 3.169

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