Literature DB >> 20694739

Triosephosphate isomerase: a highly evolved biocatalyst.

R K Wierenga1, E G Kapetaniou, R Venkatesan.   

Abstract

Triosephosphate isomerase (TIM) is a perfectly evolved enzyme which very fast interconverts dihydroxyacetone phosphate and D: -glyceraldehyde-3-phosphate. Its catalytic site is at the dimer interface, but the four catalytic residues, Asn11, Lys13, His95 and Glu167, are from the same subunit. Glu167 is the catalytic base. An important feature of the TIM active site is the concerted closure of loop-6 and loop-7 on ligand binding, shielding the catalytic site from bulk solvent. The buried active site stabilises the enediolate intermediate. The catalytic residue Glu167 is at the beginning of loop-6. On closure of loop-6, the Glu167 carboxylate moiety moves approximately 2 Å to the substrate. The dynamic properties of the Glu167 side chain in the enzyme substrate complex are a key feature of the proton shuttling mechanism. Two proton shuttling mechanisms, the classical and the criss-cross mechanism, are responsible for the interconversion of the substrates of this enolising enzyme.

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Year:  2010        PMID: 20694739     DOI: 10.1007/s00018-010-0473-9

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  121 in total

1.  Triosephosphate isomerase catalysis is diffusion controlled. Appendix: Analysis of triose phosphate equilibria in aqueous solution by 31P NMR.

Authors:  S C Blacklow; R T Raines; W A Lim; P D Zamore; J R Knowles
Journal:  Biochemistry       Date:  1988-02-23       Impact factor: 3.162

2.  New inhibitors of rabbit muscle triose-phosphate isomerase.

Authors:  M Fonvielle; S Mariano; M Therisod
Journal:  Bioorg Med Chem Lett       Date:  2005-06-02       Impact factor: 2.823

3.  Modeling, mutagenesis, and structural studies on the fully conserved phosphate-binding loop (loop 8) of triosephosphate isomerase: toward a new substrate specificity.

Authors:  B V Norledge; A M Lambeir; R A Abagyan; A Rottmann; A M Fernandez; V V Filimonov; M G Peter; R K Wierenga
Journal:  Proteins       Date:  2001-02-15

4.  The influence of pH on the interaction of inhibitors with triosephosphate isomerase and determination of the pKa of the active-site carboxyl group.

Authors:  F C Hartman; G M LaMuraglia; Y Tomozawa; R Wolfenden
Journal:  Biochemistry       Date:  1975-12-02       Impact factor: 3.162

5.  Critical ionization states in the reaction catalyzed by triosephosphate isomerase.

Authors:  J G Belasco; J M Herlihy; J R Knowles
Journal:  Biochemistry       Date:  1978-07-25       Impact factor: 3.162

6.  Transition state analogues for enzyme catalysis.

Authors:  R Wolfenden
Journal:  Nature       Date:  1969-08-16       Impact factor: 49.962

7.  Mechanistic imperatives for aldose-ketose isomerization in water: specific, general base- and metal ion-catalyzed isomerization of glyceraldehyde with proton and hydride transfer.

Authors:  R W Nagorski; J P Richard
Journal:  J Am Chem Soc       Date:  2001-02-07       Impact factor: 15.419

8.  Proton diffusion in the active site of triosephosphate isomerase.

Authors:  I A Rose; W J Fung; J V Warms
Journal:  Biochemistry       Date:  1990-05-08       Impact factor: 3.162

9.  The uncatalyzed rates of enolization of dihydroxyacetone phoshate and of glyceraldehyde 3-phosphate in neutral aqueous solution. The quantitative assessment of the effectiveness of an enzyme catalyst.

Authors:  A Hall; J R Knowles
Journal:  Biochemistry       Date:  1975-09-23       Impact factor: 3.162

10.  Xylose isomerase in substrate and inhibitor michaelis states: atomic resolution studies of a metal-mediated hydride shift.

Authors:  Timothy D Fenn; Dagmar Ringe; Gregory A Petsko
Journal:  Biochemistry       Date:  2004-06-01       Impact factor: 3.162

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  72 in total

1.  High resolution crystal structures of triosephosphate isomerase complexed with its suicide inhibitors: the conformational flexibility of the catalytic glutamate in its closed, liganded active site.

Authors:  Rajaram Venkatesan; Markus Alahuhta; Petri M Pihko; Rik K Wierenga
Journal:  Protein Sci       Date:  2011-07-07       Impact factor: 6.725

2.  Mechanism for activation of triosephosphate isomerase by phosphite dianion: the role of a ligand-driven conformational change.

Authors:  M Merced Malabanan; Tina L Amyes; John P Richard
Journal:  J Am Chem Soc       Date:  2011-09-28       Impact factor: 15.419

3.  A paradigm for enzyme-catalyzed proton transfer at carbon: triosephosphate isomerase.

Authors:  John P Richard
Journal:  Biochemistry       Date:  2012-03-20       Impact factor: 3.162

4.  The critical role of the loops of triosephosphate isomerase for its oligomerization, dynamics, and functionality.

Authors:  Ataur R Katebi; Robert L Jernigan
Journal:  Protein Sci       Date:  2013-12-31       Impact factor: 6.725

5.  Evolution of the genetic code by incorporation of amino acids that improved or changed protein function.

Authors:  Brian R Francis
Journal:  J Mol Evol       Date:  2013-06-07       Impact factor: 2.395

6.  Precision is essential for efficient catalysis in an evolved Kemp eliminase.

Authors:  Rebecca Blomberg; Hajo Kries; Daniel M Pinkas; Peer R E Mittl; Markus G Grütter; Heidi K Privett; Stephen L Mayo; Donald Hilvert
Journal:  Nature       Date:  2013-10-16       Impact factor: 49.962

Review 7.  How do glycolytic enzymes favour cancer cell proliferation by nonmetabolic functions?

Authors:  H Lincet; P Icard
Journal:  Oncogene       Date:  2014-09-29       Impact factor: 9.867

8.  How an Inhibitor Bound to Subunit Interface Alters Triosephosphate Isomerase Dynamics.

Authors:  Zeynep Kurkcuoglu; Doga Findik; Ebru Demet Akten; Pemra Doruker
Journal:  Biophys J       Date:  2015-07-16       Impact factor: 4.033

9.  Lipid-derived and other oxidative modifications of retinal proteins in a rat model of Smith-Lemli-Opitz syndrome.

Authors:  Rebecca J Kapphahn; Michael J Richards; Deborah A Ferrington; Steven J Fliesler
Journal:  Exp Eye Res       Date:  2018-08-14       Impact factor: 3.467

10.  Reflections on the catalytic power of a TIM-barrel.

Authors:  John P Richard; Xiang Zhai; M Merced Malabanan
Journal:  Bioorg Chem       Date:  2014-07-11       Impact factor: 5.275

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