Literature DB >> 11687795

Assembly of microarrays for genome-wide measurement of DNA copy number.

A M Snijders1, N Nowak, R Segraves, S Blackwood, N Brown, J Conroy, G Hamilton, A K Hindle, B Huey, K Kimura, S Law, K Myambo, J Palmer, B Ylstra, J P Yue, J W Gray, A N Jain, D Pinkel, D G Albertson.   

Abstract

We have assembled arrays of approximately 2,400 BAC clones for measurement of DNA copy number across the human genome. The arrays provide precise measurement (s.d. of log2 ratios=0.05-0.10) in cell lines and clinical material, so that we can reliably detect and quantify high-level amplifications and single-copy alterations in diploid, polyploid and heterogeneous backgrounds.

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Year:  2001        PMID： 11687795     DOI： 10.1038/ng754

Source DB:  PubMed          Journal:  Nat Genet        ISSN： 1061-4036            Impact factor:   38.330


  237 in total

1.  Fully automatic quantification of microarray image data.

Authors:  Ajay N Jain; Taku A Tokuyasu; Antoine M Snijders; Richard Segraves; Donna G Albertson; Daniel Pinkel
Journal:  Genome Res       Date:  2002-02       Impact factor: 9.043

2.  Genomic imbalances in esophageal squamous cell carcinoma identified by molecular cytogenetic techniques.

Authors:  Marilanda Ferreira Bellini; Ana Elizabete Silva; Marileila Varella-Garcia
Journal:  Genet Mol Biol       Date:  2010-06-01       Impact factor: 1.771

3.  Digital karyotyping.

Authors:  Tian-Li Wang; Christine Maierhofer; Michael R Speicher; Christoph Lengauer; Bert Vogelstein; Kenneth W Kinzler; Victor E Velculescu
Journal:  Proc Natl Acad Sci U S A       Date:  2002-12-02       Impact factor: 11.205

4.  Bayesian Random Segmentation Models to Identify Shared Copy Number Aberrations for Array CGH Data.

Authors:  Veerabhadran Baladandayuthapani; Yuan Ji; Rajesh Talluri; Luis E Nieto-Barajas; Jeffrey S Morris
Journal:  J Am Stat Assoc       Date:  2010-12       Impact factor: 5.033

5.  Relative quantification of 40 nucleic acid sequences by multiplex ligation-dependent probe amplification.

Authors:  Jan P Schouten; Cathal J McElgunn; Raymond Waaijer; Danny Zwijnenburg; Filip Diepvens; Gerard Pals
Journal:  Nucleic Acids Res       Date:  2002-06-15       Impact factor: 16.971

6.  Automated array-based genomic profiling in chronic lymphocytic leukemia: development of a clinical tool and discovery of recurrent genomic alterations.

Authors:  Carsten Schwaenen; Michelle Nessling; Swen Wessendorf; Tatjana Salvi; Gunnar Wrobel; Bernhard Radlwimmer; Hans A Kestler; Christian Haslinger; Stephan Stilgenbauer; Hartmut Döhner; Martin Bentz; Peter Lichter
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-16       Impact factor: 11.205

7.  Prospective screening for subtelomeric rearrangements in children with mental retardation of unknown aetiology: the Amsterdam experience.

Authors:  C D M van Karnebeek; C Koevoets; S Sluijter; E K Bijlsma; D F M C Smeets; E J Redeker; R C M Hennekam; J M N Hoovers
Journal:  J Med Genet       Date:  2002-08       Impact factor: 6.318

8.  Copy number variant analysis using genome-wide mate-pair sequencing.

Authors:  James B Smadbeck; Sarah H Johnson; Stephanie A Smoley; Athanasios Gaitatzes; Travis M Drucker; Roman M Zenka; Farhad Kosari; Stephen J Murphy; Nicole Hoppman; Umut Aypar; William R Sukov; Robert B Jenkins; Hutton M Kearney; Andrew L Feldman; George Vasmatzis
Journal:  Genes Chromosomes Cancer       Date:  2018-07-30       Impact factor: 5.006

9.  Genome wide array comparative genomic hybridisation analysis of premalignant lesions of the stomach.

Authors:  M M Weiss; E J Kuipers; C Postma; A M Snijders; M Stolte; M Vieth; D Pinkel; S G M Meuwissen; D Albertson; G A Meijer
Journal:  Mol Pathol       Date:  2003-10

10.  Sequential model selection-based segmentation to detect DNA copy number variation.

Authors:  Jianhua Hu; Liwen Zhang; Huixia Judy Wang
Journal:  Biometrics       Date:  2016-03-08       Impact factor: 2.571
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