Literature DB >> 11686705

Understanding the relative acyl-transfer reactivity of oxoesters and thioesters: computational analysis of transition state delocalization effects.

W Yang1, D G Drueckhammer.   

Abstract

Computational studies were performed in an effort to understand the relative reactivity of oxoesters and thioesters in nucleophilic acyl transfer reactions. Transition state models were developed for the reactions of methyl acetate and methyl thioacetate with hydroxide, ammonia, and methylcyanoacetate carbanion. Quantum mechanical calculations based on these models reproduced experimental observations that oxoesters and thioesters have similar reactivity toward hydroxide while thioesters are about 100-fold and at least 2000-fold more reactive than oxoesters toward amine and carbanion nucleophiles, respectively. NBO analysis was performed to elucidate the role of electron delocalization in reactant and transition state stabilization. These calculations indicate similar losses of delocalization energy for the oxoester and thioester in going from the reactants to the transition state in reaction with hydroxide while the loss of delocalization energy is significantly greater for the oxoester in reactions with the other nucleophiles. Bond rotational analysis of the transition states for the reactions with hydroxide and ammonia provide support for an important role of the p(X) --> sigma(C-Nu) interaction (X = O or S of the oxoester or thioester respectively, Nu = nucleophile) in governing the reactivity of oxoesters and thioesters in nucleophilic acyl substitution.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11686705     DOI: 10.1021/ja010726a

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  20 in total

Review 1.  An evaluation of peptide-bond isosteres.

Authors:  Amit Choudhary; Ronald T Raines
Journal:  Chembiochem       Date:  2011-07-12       Impact factor: 3.164

Review 2.  Molecular Basis for K63-Linked Ubiquitination Processes in Double-Strand DNA Break Repair: A Focus on Kinetics and Dynamics.

Authors:  Brian L Lee; Anamika Singh; J N Mark Glover; Michael J Hendzel; Leo Spyracopoulos
Journal:  J Mol Biol       Date:  2017-06-03       Impact factor: 5.469

Review 3.  E2s: structurally economical and functionally replete.

Authors:  Dawn M Wenzel; Kate E Stoll; Rachel E Klevit
Journal:  Biochem J       Date:  2011-01-01       Impact factor: 3.857

4.  An Unprecedented Combination of Serine and Cysteine Nucleophiles in a Split Intein with an Atypical Split Site.

Authors:  Anne-Lena Bachmann; Henning D Mootz
Journal:  J Biol Chem       Date:  2015-10-09       Impact factor: 5.157

5.  Trapping biosynthetic acyl-enzyme intermediates with encoded 2,3-diaminopropionic acid.

Authors:  Nicolas Huguenin-Dezot; Diego A Alonzo; Graham W Heberlig; Mohan Mahesh; Duy P Nguyen; Mark H Dornan; Christopher N Boddy; T Martin Schmeing; Jason W Chin
Journal:  Nature       Date:  2018-12-12       Impact factor: 49.962

6.  Chemoselectivity in chemical biology: acyl transfer reactions with sulfur and selenium.

Authors:  Nicholas A McGrath; Ronald T Raines
Journal:  Acc Chem Res       Date:  2011-06-03       Impact factor: 22.384

7.  Chemical labelling of active serum thioester proteins for quantification.

Authors:  Lotta Holm; Gareth L Ackland; Mark R Edwards; Ross A Breckenridge; Robert B Sim; John Offer
Journal:  Immunobiology       Date:  2011-07-23       Impact factor: 3.144

8.  Acyl Transfer Catalytic Activity in De Novo Designed Protein with N-Terminus of α-Helix As Oxyanion-Binding Site.

Authors:  Elise A Naudin; Alastair G McEwen; Sophia K Tan; Pierre Poussin-Courmontagne; Jean-Louis Schmitt; Catherine Birck; William F DeGrado; Vladimir Torbeev
Journal:  J Am Chem Soc       Date:  2021-02-26       Impact factor: 16.383

9.  Activity of 3'-thioAMP derivatives as ribosomal P-site substrates.

Authors:  Silke Dorner; Walther Schmid; Andrea Barta
Journal:  Nucleic Acids Res       Date:  2005-05-25       Impact factor: 16.971

10.  S-Phenyl 4-meth-oxy-benzothio-ate.

Authors:  Adel S El-Azab; Alaa A-M Abdel-Aziz; Hussein I El-Subbagh; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-17
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.