Literature DB >> 11551460

Protein interaction databases.

I Xenarios1, D Eisenberg.   

Abstract

Life depends on the interaction of proteins. The availability of the complete human genome sequence has highlighted the need for a tool to analyse protein interactions and several databases have been compiled for this purpose. These databases document, categorize, and analyze interacting proteins and the cellular functions of the interactions.

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Year:  2001        PMID： 11551460     DOI： 10.1016/s0958-1669(00)00224-x

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN： 0958-1669            Impact factor:   9.740


  24 in total

Review 1.  Large-scale plant proteomics.

Authors:  Birgit Kersten; Lukas Bürkle; Eckehard J Kuhn; Patrick Giavalisco; Zoltan Konthur; Angelika Lueking; Gerald Walter; Holger Eickhoff; Ulrich Schneider
Journal:  Plant Mol Biol       Date:  2002-01       Impact factor: 4.076

2.  Physical methods.

Authors:  Alessandro Vitale
Journal:  Plant Mol Biol       Date:  2002-12       Impact factor: 4.076

3.  ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins.

Authors:  Pål Puntervoll; Rune Linding; Christine Gemünd; Sophie Chabanis-Davidson; Morten Mattingsdal; Scott Cameron; David M A Martin; Gabriele Ausiello; Barbara Brannetti; Anna Costantini; Fabrizio Ferrè; Vincenza Maselli; Allegra Via; Gianni Cesareni; Francesca Diella; Giulio Superti-Furga; Lucjan Wyrwicz; Chenna Ramu; Caroline McGuigan; Rambabu Gudavalli; Ivica Letunic; Peer Bork; Leszek Rychlewski; Bernhard Küster; Manuela Helmer-Citterich; William N Hunter; Rein Aasland; Toby J Gibson
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

4.  DePIE: Designing Primers for Protein Interaction Experiments.

Authors:  Guoqing Lu; Michael Hallett; Stephanie Pollock; David Thomas
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

5.  Cytoscape: a software environment for integrated models of biomolecular interaction networks.

Authors:  Paul Shannon; Andrew Markiel; Owen Ozier; Nitin S Baliga; Jonathan T Wang; Daniel Ramage; Nada Amin; Benno Schwikowski; Trey Ideker
Journal:  Genome Res       Date:  2003-11       Impact factor: 9.043

6.  Computational approaches to protein-protein interaction.

Authors:  Giacomo Franzot; Oliviero Carugo
Journal:  J Struct Funct Genomics       Date:  2003

Review 7.  Aberrant epigenetic grooming of miRNAs in pancreatic cancer: a systems biology perspective.

Authors:  Asfar S Azmi; Frances W J Beck; Bin Bao; Ramzi M Mohammad; Fazlul H Sarkar
Journal:  Epigenomics       Date:  2011-12       Impact factor: 4.778

8.  PreSPI: a domain combination based prediction system for protein-protein interaction.

Authors:  Dong-Soo Han; Hong-Soog Kim; Woo-Hyuk Jang; Sung-Doke Lee; Jung-Keun Suh
Journal:  Nucleic Acids Res       Date:  2004-12-01       Impact factor: 16.971

9.  Statistical analysis of physical-chemical properties and prediction of protein-protein interfaces.

Authors:  Surendra S Negi; Werner Braun
Journal:  J Mol Model       Date:  2007-09-09       Impact factor: 1.810

10.  DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions.

Authors:  Ioannis Xenarios; Lukasz Salwínski; Xiaoqun Joyce Duan; Patrick Higney; Sul-Min Kim; David Eisenberg
Journal:  Nucleic Acids Res       Date:  2002-01-01       Impact factor: 16.971
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