Literature DB >> 11513596

On the multiple functional roles of the active site histidine in catalysis and allosteric regulation of Escherichia coli glucosamine 6-phosphate deaminase.

G M Montero-Morán1, S Lara-González, L I Alvarez-Añorve, J A Plumbridge, M L Calcagno.   

Abstract

The active site of glucosamine-6-phosphate deaminase (EC 3.5.99.6, formerly 5.3.1.10) from Escherichia coli was first characterized on the basis of the crystallographic structure of the enzyme bound to the competitive inhibitor 2-amino-2-deoxy-glucitol 6-phosphate. The structure corresponds to the R allosteric state of the enzyme; it shows the side-chain of His143 in close proximity to the O5 atom of the inhibitor. This arrangement suggests that His143 could have a role in the catalysis of the ring-opening step of glucosamine 6-phosphate whose alpha-anomer is the true substrate. The imidazole group of this active-site histidine contacts the carboxy groups from Glu148 and Asp141, via its Ndelta1 atom [Oliva et al. (1995) Structure 3, 1323-1332]. These interactions change in the T state because the side chain of Glu148 moves toward the allosteric site, leaving at the active site the dyad Asp141-His143 [Horjales et al. (1999) Structure 7, 527-536]. In this research, a dual approach using site-directed mutagenesis and controlled chemical modification of histidine residues has been used to investigate the role of the active-site histidine. Our results support a multifunctional role of His143; in the forward reaction, it is involved in the catalysis of the ring-opening step of the substrate, glucosamine 6-P. In the reverse reaction, the substrate fructose 6-P binds in its open chain, carbonylic form. The role of His143 in the binding of both glucosamine 6-P and reaction intermediates in their extended-chain forms was demonstrated by binding experiments using the reaction intermediate analogue, 2-amino-2-deoxy-D-glucitol 6-phosphate. His143 was also shown to be a critical residue for the conformational coupling between active and allosteric sites. From the pH dependence of the reactivity of the active site histidine to diethyl dicarbonate, we observed a pK(a) change of 1.2 units to the acid side when the enzyme undergoes the allosteric T to R transition during which the side chain of Glu148 moves toward the active site. The kinetic study of the Glu148-Gln mutant deaminase shows that the loss of the carboxy group and its replacement with the corresponding amide modifies the k(cat) versus pH profile of the enzyme, suggesting that the catalytic step requiring the participation of His143 has become rate-limiting. This, in turn, indicates that the interaction Glu148-His143 in the wild-type enzyme in the R state contributes to make the enzyme functional over a wide pH range.

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Year:  2001        PMID: 11513596     DOI: 10.1021/bi0105835

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  Why does Escherichia coli grow more slowly on glucosamine than on N-acetylglucosamine? Effects of enzyme levels and allosteric activation of GlcN6P deaminase (NagB) on growth rates.

Authors:  Laura I Alvarez-Añorve; Mario L Calcagno; Jacqueline Plumbridge
Journal:  J Bacteriol       Date:  2005-05       Impact factor: 3.490

2.  The Nitrogen Regulatory PII Protein (GlnB) and N-Acetylglucosamine 6-Phosphate Epimerase (NanE) Allosterically Activate Glucosamine 6-Phosphate Deaminase (NagB) in Escherichia coli.

Authors:  Irina A Rodionova; Norman Goodacre; Mohan Babu; Andrew Emili; Peter Uetz; Milton H Saier
Journal:  J Bacteriol       Date:  2018-02-07       Impact factor: 3.490

Review 3.  Engineering ribose-5-phosphate isomerase B from a central carbon metabolic enzyme to a promising sugar biocatalyst.

Authors:  Hengtao Tang; Xin Ju; Jing Zhao; Liangzhi Li
Journal:  Appl Microbiol Biotechnol       Date:  2021-01-04       Impact factor: 4.813

4.  Allosteric regulation of glucosamine-6-phosphate deaminase (NagB) and growth of Escherichia coli on glucosamine.

Authors:  Laura I Alvarez-Añorve; Ismael Bustos-Jaimes; Mario L Calcagno; Jacqueline Plumbridge
Journal:  J Bacteriol       Date:  2009-08-21       Impact factor: 3.490

5.  A genomic view of sugar transport in Mycobacterium smegmatis and Mycobacterium tuberculosis.

Authors:  Fritz Titgemeyer; Johannes Amon; Stephan Parche; Maysa Mahfoud; Johannes Bail; Maximilian Schlicht; Nadine Rehm; Dietmar Hillmann; Joachim Stephan; Britta Walter; Andreas Burkovski; Michael Niederweis
Journal:  J Bacteriol       Date:  2007-06-08       Impact factor: 3.490

6.  Electrostatic Energetics of Bacillus subtilis Ribonuclease P Protein Determined by Nuclear Magnetic Resonance-Based Histidine pKa Measurements.

Authors:  Pamela L Mosley; Kyle G Daniels; Terrence G Oas
Journal:  Biochemistry       Date:  2015-08-20       Impact factor: 3.162

7.  Allosteric Activation of Escherichia coli Glucosamine-6-Phosphate Deaminase (NagB) In Vivo Justified by Intracellular Amino Sugar Metabolite Concentrations.

Authors:  Laura I Álvarez-Añorve; Isabelle Gaugué; Hannes Link; Jorge Marcos-Viquez; Dana M Díaz-Jiménez; Sergio Zonszein; Ismael Bustos-Jaimes; Isabelle Schmitz-Afonso; Mario L Calcagno; Jacqueline Plumbridge
Journal:  J Bacteriol       Date:  2016-05-13       Impact factor: 3.490

8.  Using reaction mechanism to measure enzyme similarity.

Authors:  Noel M O'Boyle; Gemma L Holliday; Daniel E Almonacid; John B O Mitchell
Journal:  J Mol Biol       Date:  2007-03-02       Impact factor: 5.469

9.  Mixed disulfide formation at Cys141 leads to apparent unidirectional attenuation of Aspergillus niger NADP-glutamate dehydrogenase activity.

Authors:  Adhish S Walvekar; Rajarshi Choudhury; Narayan S Punekar
Journal:  PLoS One       Date:  2014-07-02       Impact factor: 3.240

10.  Construction and characterization of a Saccharomyces cerevisiae strain able to grow on glucosamine as sole carbon and nitrogen source.

Authors:  Carmen-Lisset Flores; Carlos Gancedo
Journal:  Sci Rep       Date:  2018-11-16       Impact factor: 4.379

  10 in total

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