Literature DB >> 33394147

Engineering ribose-5-phosphate isomerase B from a central carbon metabolic enzyme to a promising sugar biocatalyst.

Hengtao Tang1, Xin Ju1, Jing Zhao2, Liangzhi Li3.   

Abstract

Ribose-5-phosphate isomerase B (RpiB) was first identified in the pentose phosphate pathway responsible for the inter-conversion of ribose-5-phosphate and ribulose-5-phosphate. Though there are seldom key enzymes in central carbon metabolic system developed as useful biocatalysts, RpiB with the advantages of wide substrate scope and high stereoselectivity has become a potential biotechnological tool to fulfill the demand of rare sugars currently. In this review, the pivotal roles of RpiB in carbon metabolism are summarized, and their sequence identity and structural similarity are discussed. Substrate binding and catalytic mechanisms are illustrated to provide solid foundations for enzyme engineering. Interesting differences in origin, physiological function, structure, and catalytic mechanism between RpiB and ribose-5-phosphate isomerase A are introduced. Moreover, enzyme engineering efforts for rare sugar production are stressed, and prospects of future development are concluded briefly in the viewpoint of biocatalysis. Aided by the progresses of structural and computational biology, the application of RpiB will be promoted greatly in the preparation of valuable molecules. KEY POINTS: • Detailed illustration of RpiB's vital function in central carbon metabolism. • Potential of RpiB in sequence, substrate scope, and mechanism for application. • Enzyme engineering efforts to promote RpiB in the preparation of rare sugars.

Entities:  

Keywords:  Biocatalysis; Central carbon metabolism; Enzyme engineering; Rare sugar; Ribose-5-phosphate isomerase B; Substrate scope

Mesh:

Substances:

Year:  2021        PMID: 33394147     DOI: 10.1007/s00253-020-11075-z

Source DB:  PubMed          Journal:  Appl Microbiol Biotechnol        ISSN: 0175-7598            Impact factor:   4.813


  51 in total

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Authors:  M K Essenberg; R A Cooper
Journal:  Eur J Biochem       Date:  1975-07-01

Review 2.  Engineering biosynthetic enzymes for industrial natural product synthesis.

Authors:  Stephanie Galanie; David Entwistle; James Lalonde
Journal:  Nat Prod Rep       Date:  2020-05-04       Impact factor: 13.423

3.  Erythritol feeds the pentose phosphate pathway via three new isomerases leading to D-erythrose-4-phosphate in Brucella.

Authors:  Thibault Barbier; François Collard; Amaia Zúñiga-Ripa; Ignacio Moriyón; Thibault Godard; Judith Becker; Christoph Wittmann; Emile Van Schaftingen; Jean-Jacques Letesson
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-01       Impact factor: 11.205

4.  Role of 'D-allulose' in a starch based composite gel matrix.

Authors:  Esmanur Ilhan; Pelin Pocan; Masahiro Ogawa; Mecit Halil Oztop
Journal:  Carbohydr Polym       Date:  2019-09-28       Impact factor: 9.381

5.  Engineering of Alicyclobacillus hesperidum L-arabinose isomerase for improved catalytic activity and reduced pH optimum using random and site-directed mutagenesis.

Authors:  Chen Fan; Wei Xu; Tao Zhang; Leon Zhou; Bo Jiang; Wanmeng Mu
Journal:  Appl Biochem Biotechnol       Date:  2015-09-03       Impact factor: 2.926

6.  Engineering Escherichia coli for methanol-dependent growth on glucose for metabolite production.

Authors:  R Kyle Bennett; Michael Dillon; Jie Ren Gerald Har; Alec Agee; Bryan von Hagel; Julia Rohlhill; Maciek R Antoniewicz; Eleftherios T Papoutsakis
Journal:  Metab Eng       Date:  2020-03-13       Impact factor: 9.783

7.  Ribose-5-phosphate isomerases: characteristics, structural features, and applications.

Authors:  Jiajun Chen; Hao Wu; Wenli Zhang; Wanmeng Mu
Journal:  Appl Microbiol Biotechnol       Date:  2020-06-12       Impact factor: 4.813

Review 8.  Isomerases and epimerases for biotransformation of pentoses.

Authors:  Zheng Fang; Wenli Zhang; Tao Zhang; Cuie Guang; Wanmeng Mu
Journal:  Appl Microbiol Biotechnol       Date:  2018-07-02       Impact factor: 4.813

9.  Disclosing the essentiality of ribose-5-phosphate isomerase B in Trypanosomatids.

Authors:  Joana Faria; Inês Loureiro; Nuno Santarém; Pedro Cecílio; Sandra Macedo-Ribeiro; Joana Tavares; Anabela Cordeiro-da-Silva
Journal:  Sci Rep       Date:  2016-05-27       Impact factor: 4.379

10.  Identification of functional signatures in the metabolism of the three cellular domains of life.

Authors:  Pedro Escobar-Turriza; Rafael Hernandez-Guerrero; Augusto Cesar Poot-Hernández; Katya Rodríguez-Vázquez; Jorge Ramírez-Prado; Ernesto Pérez-Rueda
Journal:  PLoS One       Date:  2019-05-28       Impact factor: 3.240

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