Literature DB >> 11489859

Functional and evolutionary relationship between arginine biosynthesis and prokaryotic lysine biosynthesis through alpha-aminoadipate.

J Miyazaki1, N Kobashi, M Nishiyama, H Yamane.   

Abstract

Our previous studies revealed that lysine is synthesized through alpha-aminoadipate in an extremely thermophilic bacterium, Thermus thermophilus HB27. Sequence analysis of a gene cluster involved in the lysine biosynthesis of this microorganism suggested that the conversion from alpha-aminoadipate to lysine proceeds in a way similar to that of arginine biosynthesis. In the present study, we cloned an argD homolog of T. thermophilus HB27 which was not included in the previously cloned lysine biosynthetic gene cluster and determined the nucleotide sequence. A knockout of the argD-like gene, now termed lysJ, in T. thermophilus HB27 showed that this gene is essential for lysine biosynthesis in this bacterium. The lysJ gene was cloned into a plasmid and overexpressed in Escherichia coli, and the LysJ protein was purified to homogeneity. When the catalytic activity of LysJ was analyzed in a reverse reaction in the putative pathway, LysJ was found to transfer the epsilon-amino group of N(2)-acetyllysine, a putative intermediate in lysine biosynthesis, to 2-oxoglutarate. When N(2)-acetylornithine, a substrate for arginine biosynthesis, was used as the substrate for the reaction, LysJ transferred the delta-amino group of N(2)-acetylornithine to 2-oxoglutarate 16 times more efficiently than when N(2)-acetyllysine was the amino donor. All these results suggest that lysine biosynthesis in T. thermophilus HB27 is functionally and evolutionarily related to arginine biosynthesis.

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Year:  2001        PMID: 11489859      PMCID: PMC95382          DOI: 10.1128/JB.183.17.5067-5073.2001

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  32 in total

1.  Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3.

Authors:  Y Kawarabayasi; M Sawada; H Horikawa; Y Haikawa; Y Hino; S Yamamoto; M Sekine; S Baba; H Kosugi; A Hosoyama; Y Nagai; M Sakai; K Ogura; R Otsuka; H Nakazawa; M Takamiya; Y Ohfuku; T Funahashi; T Tanaka; Y Kudoh; J Yamazaki; N Kushida; A Oguchi; K Aoki; H Kikuchi
Journal:  DNA Res       Date:  1998-04-30       Impact factor: 4.458

2.  A prokaryotic gene cluster involved in synthesis of lysine through the amino adipate pathway: a key to the evolution of amino acid biosynthesis.

Authors:  H Nishida; M Nishiyama; N Kobashi; T Kosuge; T Hoshino; H Yamane
Journal:  Genome Res       Date:  1999-12       Impact factor: 9.043

3.  Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.

Authors:  K E Nelson; R A Clayton; S R Gill; M L Gwinn; R J Dodson; D H Haft; E K Hickey; J D Peterson; W C Nelson; K A Ketchum; L McDonald; T R Utterback; J A Malek; K D Linher; M M Garrett; A M Stewart; M D Cotton; M S Pratt; C A Phillips; D Richardson; J Heidelberg; G G Sutton; R D Fleischmann; J A Eisen; O White; S L Salzberg; H O Smith; J C Venter; C M Fraser
Journal:  Nature       Date:  1999-05-27       Impact factor: 49.962

4.  The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus.

Authors:  H P Klenk; R A Clayton; J F Tomb; O White; K E Nelson; K A Ketchum; R J Dodson; M Gwinn; E K Hickey; J D Peterson; D L Richardson; A R Kerlavage; D E Graham; N C Kyrpides; R D Fleischmann; J Quackenbush; N H Lee; G G Sutton; S Gill; E F Kirkness; B A Dougherty; K McKenney; M D Adams; B Loftus; S Peterson; C I Reich; L K McNeil; J H Badger; A Glodek; L Zhou; R Overbeek; J D Gocayne; J F Weidman; L McDonald; T Utterback; M D Cotton; T Spriggs; P Artiach; B P Kaine; S M Sykes; P W Sadow; K P D'Andrea; C Bowman; C Fujii; S A Garland; T M Mason; G J Olsen; C M Fraser; H O Smith; C R Woese; J C Venter
Journal:  Nature       Date:  1997-11-27       Impact factor: 49.962

5.  Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1.

Authors:  O White; J A Eisen; J F Heidelberg; E K Hickey; J D Peterson; R J Dodson; D H Haft; M L Gwinn; W C Nelson; D L Richardson; K S Moffat; H Qin; L Jiang; W Pamphile; M Crosby; M Shen; J J Vamathevan; P Lam; L McDonald; T Utterback; C Zalewski; K S Makarova; L Aravind; M J Daly; K W Minton; R D Fleischmann; K A Ketchum; K E Nelson; S Salzberg; H O Smith; J C Venter; C M Fraser
Journal:  Science       Date:  1999-11-19       Impact factor: 47.728

6.  A unique fungal lysine biosynthesis enzyme shares a common ancestor with tricarboxylic acid cycle and leucine biosynthetic enzymes found in diverse organisms.

Authors:  S D Irvin; J K Bhattacharjee
Journal:  J Mol Evol       Date:  1998-04       Impact factor: 2.395

7.  Aspartate kinase-independent lysine synthesis in an extremely thermophilic bacterium, Thermus thermophilus: lysine is synthesized via alpha-aminoadipic acid not via diaminopimelic acid.

Authors:  N Kobashi; M Nishiyama; M Tanokura
Journal:  J Bacteriol       Date:  1999-03       Impact factor: 3.490

8.  The dual biosynthetic capability of N-acetylornithine aminotransferase in arginine and lysine biosynthesis.

Authors:  R Ledwidge; J S Blanchard
Journal:  Biochemistry       Date:  1999-03-09       Impact factor: 3.162

9.  Cloning and characterization of the aru genes encoding enzymes of the catabolic arginine succinyltransferase pathway in Pseudomonas aeruginosa.

Authors:  Y Itoh
Journal:  J Bacteriol       Date:  1997-12       Impact factor: 3.490

10.  Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.

Authors:  S T Cole; R Brosch; J Parkhill; T Garnier; C Churcher; D Harris; S V Gordon; K Eiglmeier; S Gas; C E Barry; F Tekaia; K Badcock; D Basham; D Brown; T Chillingworth; R Connor; R Davies; K Devlin; T Feltwell; S Gentles; N Hamlin; S Holroyd; T Hornsby; K Jagels; A Krogh; J McLean; S Moule; L Murphy; K Oliver; J Osborne; M A Quail; M A Rajandream; J Rogers; S Rutter; K Seeger; J Skelton; R Squares; S Squares; J E Sulston; K Taylor; S Whitehead; B G Barrell
Journal:  Nature       Date:  1998-06-11       Impact factor: 49.962

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  14 in total

1.  Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ·LysW complex from Thermus thermophilus.

Authors:  Ayako Yoshida; Takeo Tomita; Tsutomu Fujimura; Chiharu Nishiyama; Tomohisa Kuzuyama; Makoto Nishiyama
Journal:  J Biol Chem       Date:  2014-11-12       Impact factor: 5.157

2.  ISSOL '02. Abstracts of the 13th International Conference on the Origin of Life. Oaxaca, Mexico, June 30-July 5, 2002.

Authors: 
Journal:  Orig Life Evol Biosph       Date:  2002-12       Impact factor: 1.950

3.  Genome-wide comprehensive analysis of transcriptional regulation by ArgR in Thermus thermophilus.

Authors:  Naoki Iwanaga; Kaori Ide; Takeshi Nagashima; Takeo Tomita; Yoshihiro Agari; Akeo Shinkai; Seiki Kuramitsu; Mariko Okada-Hatakeyema; Tomohisa Kuzuyama; Makoto Nishiyama
Journal:  Extremophiles       Date:  2014-07-29       Impact factor: 2.395

4.  Lysine and arginine biosyntheses mediated by a common carrier protein in Sulfolobus.

Authors:  Takuya Ouchi; Takeo Tomita; Akira Horie; Ayako Yoshida; Kento Takahashi; Hiromi Nishida; Kerstin Lassak; Hikari Taka; Reiko Mineki; Tsutomu Fujimura; Saori Kosono; Chiharu Nishiyama; Ryoji Masui; Seiki Kuramitsu; Sonja-Verena Albers; Tomohisa Kuzuyama; Makoto Nishiyama
Journal:  Nat Chem Biol       Date:  2013-02-24       Impact factor: 15.040

5.  Novel posttranslational activation of the LYS2-encoded alpha-aminoadipate reductase for biosynthesis of lysine and site-directed mutational analysis of conserved amino acid residues in the activation domain of Candida albicans.

Authors:  S Guo; S A Evans; M B Wilkes; J K Bhattacharjee
Journal:  J Bacteriol       Date:  2001-12       Impact factor: 3.490

6.  Mechanism of substrate recognition and insight into feedback inhibition of homocitrate synthase from Thermus thermophilus.

Authors:  Takuya Okada; Takeo Tomita; Asri P Wulandari; Tomohisa Kuzuyama; Makoto Nishiyama
Journal:  J Biol Chem       Date:  2009-12-07       Impact factor: 5.157

7.  13C metabolic flux analysis of three divergent extremely thermophilic bacteria: Geobacillus sp. LC300, Thermus thermophilus HB8, and Rhodothermus marinus DSM 4252.

Authors:  Lauren T Cordova; Robert M Cipolla; Adti Swarup; Christopher P Long; Maciek R Antoniewicz
Journal:  Metab Eng       Date:  2017-10-14       Impact factor: 9.783

8.  Crystal structure of tetrameric homoisocitrate dehydrogenase from an extreme thermophile, Thermus thermophilus: involvement of hydrophobic dimer-dimer interaction in extremely high thermotolerance.

Authors:  Junichi Miyazaki; Kuniko Asada; Shinya Fushinobu; Tomohisa Kuzuyama; Makoto Nishiyama
Journal:  J Bacteriol       Date:  2005-10       Impact factor: 3.490

9.  Discovery of proteinaceous N-modification in lysine biosynthesis of Thermus thermophilus.

Authors:  Akira Horie; Takeo Tomita; Asako Saiki; Hidetoshi Kono; Hikari Taka; Reiko Mineki; Tsutomu Fujimura; Chiharu Nishiyama; Tomohisa Kuzuyama; Makoto Nishiyama
Journal:  Nat Chem Biol       Date:  2009-07-20       Impact factor: 15.040

10.  Kinetics and product analysis of the reaction catalysed by recombinant homoaconitase from Thermus thermophilus.

Authors:  Yunhua Jia; Takeo Tomita; Kazuma Yamauchi; Makoto Nishiyama; David R J Palmer
Journal:  Biochem J       Date:  2006-06-15       Impact factor: 3.857

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