Literature DB >> 23434852

Lysine and arginine biosyntheses mediated by a common carrier protein in Sulfolobus.

Takuya Ouchi1, Takeo Tomita, Akira Horie, Ayako Yoshida, Kento Takahashi, Hiromi Nishida, Kerstin Lassak, Hikari Taka, Reiko Mineki, Tsutomu Fujimura, Saori Kosono, Chiharu Nishiyama, Ryoji Masui, Seiki Kuramitsu, Sonja-Verena Albers, Tomohisa Kuzuyama, Makoto Nishiyama.   

Abstract

LysW has been identified as a carrier protein in the lysine biosynthetic pathway that is active through the conversion of α-aminoadipate (AAA) to lysine. In this study, we found that the hyperthermophilic archaeon, Sulfolobus acidocaldarius, not only biosynthesizes lysine through LysW-mediated protection of AAA but also uses LysW to protect the amino group of glutamate in arginine biosynthesis. In this archaeon, after LysW modification, AAA and glutamate are converted to lysine and ornithine, respectively, by a single set of enzymes with dual functions. The crystal structure of ArgX, the enzyme responsible for modification and protection of the amino moiety of glutamate with LysW, was determined in complex with LysW. Structural comparison and enzymatic characterization using Sulfolobus LysX, Sulfolobus ArgX and Thermus LysX identify the amino acid motif responsible for substrate discrimination between AAA and glutamate. Phylogenetic analysis reveals that gene duplication events at different stages of evolution led to ArgX and LysX.

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Year:  2013        PMID: 23434852     DOI: 10.1038/nchembio.1200

Source DB:  PubMed          Journal:  Nat Chem Biol        ISSN: 1552-4450            Impact factor:   15.040


  28 in total

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Authors:  Arie B Brinkman; Stephen D Bell; Robert Jan Lebbink; Willem M de Vos; John van der Oost
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Authors:  R A Jensen
Journal:  Annu Rev Microbiol       Date:  1976       Impact factor: 15.500

5.  Functional and evolutionary relationship between arginine biosynthesis and prokaryotic lysine biosynthesis through alpha-aminoadipate.

Authors:  J Miyazaki; N Kobashi; M Nishiyama; H Yamane
Journal:  J Bacteriol       Date:  2001-09       Impact factor: 3.490

6.  Aspartate kinase-independent lysine synthesis in an extremely thermophilic bacterium, Thermus thermophilus: lysine is synthesized via alpha-aminoadipic acid not via diaminopimelic acid.

Authors:  N Kobashi; M Nishiyama; M Tanokura
Journal:  J Bacteriol       Date:  1999-03       Impact factor: 3.490

7.  The primordial metabolism: an ancestral interconnection between leucine, arginine, and lysine biosynthesis.

Authors:  Marco Fondi; Matteo Brilli; Giovanni Emiliani; Donatella Paffetti; Renato Fani
Journal:  BMC Evol Biol       Date:  2007-08-16       Impact factor: 3.260

8.  Versatile Genetic Tool Box for the Crenarchaeote Sulfolobus acidocaldarius.

Authors:  Michaela Wagner; Marleen van Wolferen; Alexander Wagner; Kerstin Lassak; Benjamin H Meyer; Julia Reimann; Sonja-Verena Albers
Journal:  Front Microbiol       Date:  2012-06-13       Impact factor: 5.640

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Journal:  BMC Bioinformatics       Date:  2004-08-19       Impact factor: 3.169

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Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
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  21 in total

1.  Structural insight into amino group-carrier protein-mediated lysine biosynthesis: crystal structure of the LysZ·LysW complex from Thermus thermophilus.

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Journal:  J Biol Chem       Date:  2014-11-12       Impact factor: 5.157

2.  Structural polymorphism of the Escherichia coli poly-α-L-glutamate synthetase RimK.

Authors:  Yasuhiro Arimura; Tomonori Kono; Kuniki Kino; Hitoshi Kurumizaka
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-06-26       Impact factor: 1.056

3.  Complex Formation between Two Biosynthetic Enzymes Modifies the Allosteric Regulatory Properties of Both: AN EXAMPLE OF MOLECULAR SYMBIOSIS.

Authors:  Nicola J Blackmore; Ali Reza Nazmi; Richard D Hutton; Melissa N Webby; Edward N Baker; Geoffrey B Jameson; Emily J Parker
Journal:  J Biol Chem       Date:  2015-06-01       Impact factor: 5.157

4.  Characterization of two β-decarboxylating dehydrogenases from Sulfolobus acidocaldarius.

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Journal:  Extremophiles       Date:  2016-09-02       Impact factor: 2.395

5.  Amino-group carrier-protein-mediated secondary metabolite biosynthesis in Streptomyces.

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Journal:  Nat Chem Biol       Date:  2016-09-26       Impact factor: 15.040

6.  Use of a scaffold peptide in the biosynthesis of amino acid-derived natural products.

Authors:  Chi P Ting; Michael A Funk; Steve L Halaby; Zhengan Zhang; Tamir Gonen; Wilfred A van der Donk
Journal:  Science       Date:  2019-07-19       Impact factor: 47.728

7.  Crystal Structure of the LysY·LysW Complex from Thermus thermophilus.

Authors:  Tetsu Shimizu; Takeo Tomita; Tomohisa Kuzuyama; Makoto Nishiyama
Journal:  J Biol Chem       Date:  2016-03-09       Impact factor: 5.157

8.  Lysine Biosynthesis of Thermococcus kodakarensis with the Capacity to Function as an Ornithine Biosynthetic System.

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Journal:  J Biol Chem       Date:  2016-08-26       Impact factor: 5.157

9.  Transcriptomes of the Extremely Thermoacidophilic Archaeon Metallosphaera sedula Exposed to Metal "Shock" Reveal Generic and Specific Metal Responses.

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10.  Structural Basis for a Dual Function ATP Grasp Ligase That Installs Single and Bicyclic ω-Ester Macrocycles in a New Multicore RiPP Natural Product.

Authors:  Gengxiang Zhao; Dalibor Kosek; Hong-Bing Liu; Shannon I Ohlemacher; Brittney Blackburne; Anastasia Nikolskaya; Kira S Makarova; Jiadong Sun; Clifton E Barry Iii; Eugene V Koonin; Fred Dyda; Carole A Bewley
Journal:  J Am Chem Soc       Date:  2021-05-24       Impact factor: 16.383

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