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Literature DB >> 11481432

Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid.

M J Barnett¹, R F Fisher, T Jones, C Komp, A P Abola, F Barloy-Hubler, L Bowser, D Capela, F Galibert, J Gouzy, M Gurjal, A Hong, L Huizar, R W Hyman, D Kahn, M L Kahn, S Kalman, D H Keating, C Palm, M C Peck, R Surzycki, D H Wells, K C Yeh, R W Davis, N A Federspiel, S R Long.

Abstract

The symbiotic nitrogen-fixing soil bacterium Sinorhizobium meliloti contains three replicons: pSymA, pSymB, and the chromosome. We report here the complete 1,354,226-nt sequence of pSymA. In addition to a large fraction of the genes known to be specifically involved in symbiosis, pSymA contains genes likely to be involved in nitrogen and carbon metabolism, transport, stress, and resistance responses, and other functions that give S. meliloti an advantage in its specialized niche.

Entities: Chemical Species

Mesh：

Substances：

Year: 2001 PMID： 11481432 PMCID： PMC55547 DOI： 10.1073/pnas.161294798

Source DB: PubMed Journal: Proc Natl Acad Sci U S A ISSN： 0027-8424 Impact factor: 11.205

65 in total

1. The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti.

Authors: T M Finan; S Weidner; K Wong; J Buhrmester; P Chain; F J Vorhölter; I Hernandez-Lucas; A Becker; A Cowie; J Gouzy; B Golding; A Pühler
Journal: Proc Natl Acad Sci U S A Date: 2001-07-31 Impact factor: 11.205

2. Base-calling of automated sequencer traces using phred. I. Accuracy assessment.

Authors: B Ewing; L Hillier; M C Wendl; P Green
Journal: Genome Res Date: 1998-03 Impact factor: 9.043

3. The composite genome of the legume symbiont Sinorhizobium meliloti.

Authors: F Galibert; T M Finan; S R Long; A Puhler; P Abola; F Ampe; F Barloy-Hubler; M J Barnett; A Becker; P Boistard; G Bothe; M Boutry; L Bowser; J Buhrmester; E Cadieu; D Capela; P Chain; A Cowie; R W Davis; S Dreano; N A Federspiel; R F Fisher; S Gloux; T Godrie; A Goffeau; B Golding; J Gouzy; M Gurjal; I Hernandez-Lucas; A Hong; L Huizar; R W Hyman; T Jones; D Kahn; M L Kahn; S Kalman; D H Keating; E Kiss; C Komp; V Lelaure; D Masuy; C Palm; M C Peck; T M Pohl; D Portetelle; B Purnelle; U Ramsperger; R Surzycki; P Thebault; M Vandenbol; F J Vorholter; S Weidner; D H Wells; K Wong; K C Yeh; J Batut
Journal: Science Date: 2001-07-27 Impact factor: 47.728

4. A comprehensive set of sequence analysis programs for the VAX.

Authors: J Devereux; P Haeberli; O Smithies
Journal: Nucleic Acids Res Date: 1984-01-11 Impact factor: 16.971

5. Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021.

Authors: D Capela; F Barloy-Hubler; J Gouzy; G Bothe; F Ampe; J Batut; P Boistard; A Becker; M Boutry; E Cadieu; S Dréano; S Gloux; T Godrie; A Goffeau; D Kahn; E Kiss; V Lelaure; D Masuy; T Pohl; D Portetelle; A Pühler; B Purnelle; U Ramsperger; C Renard; P Thébault; M Vandenbol; S Weidner; F Galibert
Journal: Proc Natl Acad Sci U S A Date: 2001-07-31 Impact factor: 11.205

6. Negative autoregulation of the Rhizobium meliloti fixK gene is indirect and requires a newly identified regulator, FixT.

Authors: M Foussard; A M Garnerone; F Ni; E Soupène; P Boistard; J Batut
Journal: Mol Microbiol Date: 1997-07 Impact factor: 3.501

7. Physical map of the genome of Rhizobium meliloti 1021.

Authors: R J Honeycutt; M McClelland; B W Sobral
Journal: J Bacteriol Date: 1993-11 Impact factor: 3.490

8. Physical and genetic characterization of symbiotic and auxotrophic mutants of Rhizobium meliloti induced by transposon Tn5 mutagenesis.

Authors: H M Meade; S R Long; G B Ruvkun; S E Brown; F M Ausubel
Journal: J Bacteriol Date: 1982-01 Impact factor: 3.490

9. Structural relationships among Rhizobium meliloti symbiotic promoters.

Authors: M Better; B Lewis; D Corbin; G Ditta; D R Helinski
Journal: Cell Date: 1983-12 Impact factor: 41.582

10. Genetic snapshots of the Rhizobium species NGR234 genome.

Authors: V Viprey; A Rosenthal; W J Broughton; X Perret
Journal: Genome Biol Date: 2000-12-04 Impact factor: 13.583

104 in total

1. The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti.

2. Enzyme-specific profiles for genome annotation: PRIAM.

Authors: Clotilde Claudel-Renard; Claude Chevalet; Thomas Faraut; Daniel Kahn
Journal: Nucleic Acids Res Date: 2003-11-15 Impact factor: 16.971

Review 3. Infection and invasion of roots by symbiotic, nitrogen-fixing rhizobia during nodulation of temperate legumes.

Authors: Daniel J Gage
Journal: Microbiol Mol Biol Rev Date: 2004-06 Impact factor: 11.056

4. Regulatory role of Rhizobium etli CNPAF512 fnrN during symbiosis.

Authors: Martine Moris; Bruno Dombrecht; Chuanwu Xi; Jos Vanderleyden; Jan Michiels
Journal: Appl Environ Microbiol Date: 2004-03 Impact factor: 4.792

5. Auxins upregulate nif and fix genes.

Authors: Carmen Bianco; Roberto Defez
Journal: Plant Signal Behav Date: 2010-10-01

Review 6. Chemotaxis signaling systems in model beneficial plant-bacteria associations.

Authors: Birgit E Scharf; Michael F Hynes; Gladys M Alexandre
Journal: Plant Mol Biol Date: 2016-01-21 Impact factor: 4.076

7. The nodulation of alfalfa by the acid-tolerant Rhizobium sp. strain LPU83 does not require sulfated forms of lipochitooligosaccharide nodulation signals.

Authors: Gonzalo Torres Tejerizo; María Florencia Del Papa; M Eugenia Soria-Diaz; Walter Draghi; Mauricio Lozano; María de los Ángeles Giusti; Hamid Manyani; Manuel Megías; Antonio Gil Serrano; Alfred Pühler; Karsten Niehaus; Antonio Lagares; Mariano Pistorio
Journal: J Bacteriol Date: 2010-10-22 Impact factor: 3.490

Review 8. Genomes of the symbiotic nitrogen-fixing bacteria of legumes.

Authors: Allyson M MacLean; Turlough M Finan; Michael J Sadowsky
Journal: Plant Physiol Date: 2007-06 Impact factor: 8.340

Review 9. Multidrug resistance in bacteria.

Authors: Hiroshi Nikaido
Journal: Annu Rev Biochem Date: 2009 Impact factor: 23.643

10. Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family.

Authors: Holger Wagner; Burkhard Morgenstern; Andreas Dress
Journal: Algorithms Mol Biol Date: 2008-11-06 Impact factor: 1.405