Literature DB >> 11439097

Amphibian DNases I are characterized by a C-terminal end with a unique, cysteine-rich stretch and by the insertion of a serine residue into the Ca2+-binding site.

H Takeshita1, T Yasuda, R Iida, T Nakajima, S Mori, K Mogi, Y Kaneko, K Kishi.   

Abstract

We purified four amphibian deoxyribonucleases I from the pancreases of one toad, two frog and one newt species, by using three different column chromatography methods in sequence. Each of the purified enzymes had a molecular mass of approx. 40 kDa and an optimal pH for activity of approx. 8.0. These values were significantly greater than those for other vertebrate DNases I. The full-length cDNA encoding each amphibian DNase I was constructed from the total RNA of the pancreas by using rapid amplification of cDNA ends. Nucleotide sequence analyses revealed two structural characteristics unique to amphibian DNases I: a stretch of approx. 70 amino acids with a high cysteine content (approx. 15%) in the C-terminal region, and the insertion of a serine residue at position 205 (in a domain containing an essential Ca2+-binding site). Expression analysis of a series of mutant constructs indicated that both of these structures are essential in generating the active form of the enzyme. 'DNase I signature sequences', which are well conserved in other vertebrate DNases I, could not be found in any of the amphibian DNases I tested, whereas a 'somatomedin B motif' was identified in the Cys-rich stretches of all four. Although DNase I has so far been considered to be a secretory glycoprotein, amphibian DNase I seems to be non-glycosylated. These structural findings indicate strongly that amphibian DNases I are situated in a unique position on the phylogenetic tree of the DNase I family.

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Year:  2001        PMID: 11439097      PMCID: PMC1221974          DOI: 10.1042/0264-6021:3570473

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  38 in total

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Authors:  B Polzar; H G Mannherz
Journal:  Nucleic Acids Res       Date:  1990-12-11       Impact factor: 16.971

2.  Human serum deoxyribonuclease I (DNase I) polymorphism: pattern similarities among isozymes from serum, urine, kidney, liver, and pancreas.

Authors:  K Kishi; T Yasuda; Y Ikehara; K Sawazaki; W Sato; R Iida
Journal:  Am J Hum Genet       Date:  1990-07       Impact factor: 11.025

3.  Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.

Authors:  P Chomczynski; N Sacchi
Journal:  Anal Biochem       Date:  1987-04       Impact factor: 3.365

4.  Site-directed mutagenesis by overlap extension using the polymerase chain reaction.

Authors:  S N Ho; H D Hunt; R M Horton; J K Pullen; L R Pease
Journal:  Gene       Date:  1989-04-15       Impact factor: 3.688

5.  At least six nucleotides preceding the AUG initiator codon enhance translation in mammalian cells.

Authors:  M Kozak
Journal:  J Mol Biol       Date:  1987-08-20       Impact factor: 5.469

6.  Measurement of deoxyribonuclease I activity in human tissues and body fluids by a single radial enzyme-diffusion method.

Authors:  D Nadano; T Yasuda; K Kishi
Journal:  Clin Chem       Date:  1993-03       Impact factor: 8.327

7.  Human genetically polymorphic deoxyribonuclease: purification, characterization, and multiplicity of urine deoxyribonuclease I.

Authors:  T Yasuda; S Awazu; W Sato; R Iida; Y Tanaka; K Kishi
Journal:  J Biochem       Date:  1990-09       Impact factor: 3.387

8.  Comparison of various immunological methods for distinguishing among mammalian pancreatic ribonucleases of known amino acid sequence.

Authors:  E M Prager; G W Welling; A C Wilson
Journal:  J Mol Evol       Date:  1978-02-21       Impact factor: 2.395

9.  Crystallographic refinement and structure of DNase I at 2 A resolution.

Authors:  C Oefner; D Suck
Journal:  J Mol Biol       Date:  1986-12-05       Impact factor: 5.469

10.  Three-dimensional structure of bovine pancreatic DNase I at 2.5 A resolution.

Authors:  D Suck; C Oefner; W Kabsch
Journal:  EMBO J       Date:  1984-10       Impact factor: 11.598

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  4 in total

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Journal:  Protein Sci       Date:  2004-04       Impact factor: 6.725

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4.  Identification of the functional alleles of the nonsynonymous single-nucleotide polymorphisms potentially implicated in systemic lupus erythematosus in the human deoxyribonuclease I gene.

Authors:  Kaori Kimura-Kataoka; Misuzu Ueki; Haruo Takeshita; Junko Fujihara; Reiko Iida; Yasuyuki Kawai; Toshihiro Yasuda
Journal:  DNA Cell Biol       Date:  2014-05-12       Impact factor: 3.311

  4 in total

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